Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1 183 3e-41 >seq1 Length=5074932 Score = 183 bits (202), Expect = 3e-41 Identities = 492/743 (66%), Gaps = 7/743 (1%) Strand=Plus/Plus Query 12947 CAATAGTATTTTTTACAC-CCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTA 13005 ||||| || ||| ||| || | ||| | | ||| | ||||| ||||| || || || Sbjct 4719437 CAATATTACCTTTCCCACTCCCAGTTCGACAAGCAAACGATCAGCCACAAATTCGATATA 4719496 Query 13006 CTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAA 13065 | ||||| | ||| ||||| || ||||| || || |||| ||| || ||||| || Sbjct 4719497 ATCAGACATTAGTTTACAATTCATACCGATTAAATTAACCGGCAAAGCGTCAGTTAAGAA 4719556 Query 13066 GtttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGG 13125 | || || || ||| ||||| || ||| || ||| ||||| || | | | Sbjct 4719557 TTCTTGCTCAATTGTAACAGCTTCTGAAATTATTTCAACAATT-CGTTCATTACTTG-GT 4719614 Query 13126 ATTTG-AT-AGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTA 13183 |||| || | ||| | ||||| | |||||| || ||||| || | || ||||||| Sbjct 4719615 TTTTGTATCAAATGTTGGAACATTAAACATGCGAAGTCACAATGTAGACCCTCATCTCGT 4719674 Query 13184 CTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAAT 13243 ||||| || || |||||||| | || ||||| | || ||||| |||| |||||| Sbjct 4719675 GAGATTAGTTCATTAGAAAATGTCAAGCCAGGCATTAAACCGCGTTTCTTAAGCCAAAAG 4719734 Query 13244 ATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTT 13303 || | |||||| || || || || |||||||| || ||||| || || | | | Sbjct 4719735 ATCGAAGCAAAACTGCCACTGAAGAAAATGCCTTCAACAGCGGCAAATGCAATTACACGT 4719794 Query 13304 TCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTG-TTT 13362 |||||| | | ||| ||||| ||||| | || || | ||| Sbjct 4719795 TCACCAAAGTTGGCCGACTTAGAAGAAATCCAAGCAAGTGCCCAATCAGCCTTACGCTTT 4719854 Query 13363 AACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAAT 13422 | ||||| ||| | || || ||||| ||||| |||||| ||| || || ||| Sbjct 4719855 ACCGCAGG-CATTGTCTCAATAGCGTTGAATAAGTAATTTCTTTGTTTCGAATCCTTAAT 4719913 Query 13423 ATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAA 13482 ||| ||||| || |||| ||||||||||| ||||| | ||||||||| || ||||| || Sbjct 4719914 ATACGTATCAATTAATATACTATACATTTCAGAATGCACATTTTCCATAGCAATTTGAAA 4719973 Query 13483 ACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTT 13542 ||||| || || | ||||||| || || ||||| | || | ||| |||| || Sbjct 4719974 TCCATAGAAGCAACGTGCCTCTGTAACTTGCACTTCTTGGCTGAAGCGTTCAACTAAATT 4720033 Query 13543 TTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAtttttt 13602 ||| || || || || ||| || || || || || | | ||| ||| || | | Sbjct 4720034 TTCATTCACAATACCATCAGATGCGGCGAAGAAGGCTAACACGTGTGAAATGAAATGTCG 4720093 Query 13603 ttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAAC 13662 ||| || || | | | |||||| | |||||| || | |||||| |||||||| Sbjct 4720094 TTCATTATCAGTGAGACGTGCCCAATCATCCATATCTTTAGAAAGATCTACTTCCTCAAC 4720153 Query 13663 GGTCCAAAAAGAAGCAACAGCCT 13685 ||||| || || || | |||| Sbjct 4720154 TGTCCAGAACGATGCTTCTGCCT 4720176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430792266457596