Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq138 187 6e-42 seq4 152 1e-31 seq15 131 4e-25 seq1 125 2e-23 >seq138 Length=433312 Score = 187 bits (206), Expect = 6e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || | ||| |||| |||||| ||||| |||||||||||||||||||||| Sbjct 21755 CCACCTCTAAGACGAAGGACTAAATGTAACGTAGACTCTTTCTGAATATTATAGTCAGCC 21696 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | || | ||| || || | |||||||| ||||||||||| | ||||||||| || || Sbjct 21695 AATGTGCGACCATCCTCCAACTGTTTTCCGGCAAAAATTAGACGCTGTTGATCTGGCGGA 21636 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| ||||| ||||| || || || |||| ||| | ||||| |||||| ||| Sbjct 21635 ATACCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGTTCAACC 21576 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || ||||| || ||||| |||||||| || || |||||| Sbjct 21575 TCAAGAGTGATGGTCTTGCCCGTAAGGGTTTTTACGAAAATTTGCATT 21528 >seq4 Length=3596895 Score = 152 bits (168), Expect = 1e-31 Identities = 174/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | ||| || | ||| | |||||| || ||||| || || || || Sbjct 3259398 ATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCG 3259339 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | |||||||| ||||| || || ||||| |||| | |||||||| || Sbjct 3259338 GACAAGGTGCGTCCGTCTTCCAGTTGCTTACCGGCAAAGATTAAACGTTGTTGATCTGGG 3259279 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| || |||||||| ||||| |||||||| | |||||| ||||| Sbjct 3259278 GGGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 3259219 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||| ||||| | || || || || || ||||||||| Sbjct 3259218 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTG 3259165 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || |||| |||||| || ||||| |||||||||||||| || || || || | || || Sbjct 3259608 AGAACTAAATGTAAAGTGGATTCCTTCTGAATATTATAATCGGACAGTGTGCGTCCATCC 3259549 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | ||||| ||||| ||||| | | |||||||| || || |||||||| ||||| Sbjct 3259548 TCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCT 3259489 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || ||||| ||||| || | |||||| ||| || ||||| | || || || Sbjct 3259488 TGAATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTT 3259429 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | ||||| || || |||||||| Sbjct 3259428 TTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 3259397 >seq15 Length=2140121 Score = 131 bits (144), Expect = 4e-25 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 ||| || || || ||||| || ||||| || | || | ||| ||||||| ||||||||| Sbjct 600247 TGTTGACTCCTTTTGAATGTTGTAGTCGGACAAGGTGCGACCATCTTCTAATTGTTTTCC 600306 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 || || || | | |||||| || || || || || ||||| || || || || ||||| Sbjct 600307 GGCGAAGATCAAACGCTGTTGGTCTGGGGGGATACCCTCTTTGTCTTGGATTTTAGCTTT 600366 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 |||||||| | ||| || ||| || ||||||| || || ||||||||||| | || Sbjct 600367 GACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTGATGGTCTTACCAGTTAAGGT 600426 Query 104542 TTTTACAAATATCTGCATTTTG 104563 ||| || || ||||||||| || Sbjct 600427 TTTGACGAAAATCTGCATTCTG 600448 >seq1 Length=5074932 Score = 125 bits (138), Expect = 2e-23 Identities = 395/600 (66%), Gaps = 24/600 (4%) Strand=Plus/Minus Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935 ||||||||| || || |||||| |||| || ||| | ||||| || || || | || Sbjct 4720052 TGATGGTATTGTGAATGAAAATTTAGTTGAACGCTTCAGCCAAGAAGTGCAAGTTACAGA 4719993 Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995 || | || || || ||||| || || ||||| |||||| | ||||| || ||||| || Sbjct 4719992 GGCACGTTGCTTCTATGGATTTCAAATTGCTATGGAAAATGTGCATTCTGAAATGTATAG 4719933 Query 268996 TCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACT-ATTTTCTTCTA 269054 | ||||||| ||||| ||||| | ||| || ||| |||| ||| ||| ||| Sbjct 4719932 TATATTAATTGATACGTATATTAAGGATTCGAAACAAA-GAAATTACTTATTCAACGCTA 4719874 Query 269055 T-GAGAACTATGGACTGTGTGAGaaaa----aaaTCTGAATGGGCTCTGAAATGGATAAA 269109 | |||| | ||| ||| | | ||| || |||| ||||| || ||||| Sbjct 4719873 TTGAGA-CAATGC-CTGCG---GTAAAGCGTAAGGCTGATTGGGCACTTGCTTGGATTTC 4719819 Query 269110 CGATAGCGCGCCTTAC---GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATT 269166 || || | || || ||| | || |||| ||||||||||| ||||| || || Sbjct 4719818 TTCTAAGTCGGCCAACTTTGGTGAACGTGTAATTGCATTTGCCGCTGTTGAAGGCATTTT 4719759 Query 269167 CTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATT 269226 ||| || |||||| | ||||||||| | |||||| | || | ||||| || || Sbjct 4719758 CTTCAGTGGCAGTTTTGCTTCGATCTTTTGGCTTAAGAAACGCGGTTTAATGCCTGGCTT 4719699 Query 269227 AACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTT 269286 || || ||||| ||| | || | || || ||| |||| || |||||||| ||||| Sbjct 4719698 GACATTTTCTAATGAACTAATCTCACGAGATGAGGGTCTACATTGTGACTTCGCATGTTT 4719639 Query 269287 ATTATTTACTAATTATCTTTCACACAAACCTTCTCAAGATAGAGTATACGAAATTAT--- 269343 | || | | || || | ||| ||||| | | || || | ||||| || Sbjct 4719638 A--ATGTTCCAA-CATTTGATACAAAAACCAAGTAATGAACGAATTGTTGAAATAATTTC 4719582 Query 269344 AGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTAT 269403 ||| ||||||| | | || |||||| |||| || ||| | | | || | || Sbjct 4719581 AGA---AGCTGTTACAATTGAGCAAGAATTCTTAACTGACGCTTTGCCGGTTAATTTAAT 4719525 Query 269404 CGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGT 269463 |||||||||| | ||| ||| || ||||| | || || ||||| | ||||| || Sbjct 4719524 CGGTATGAATTGTAAACTAATGTCTGATTATATCGAATTTGTGGCTGATCGTTTGCTTGT 4719465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150864396534184