Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29]
36,198 sequences; 471,780,370 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq138 187 6e-42
seq4 152 1e-31
seq15 131 4e-25
seq1 125 2e-23
>seq138
Length=433312
Score = 187 bits (206), Expect = 6e-42
Identities = 178/228 (78%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| ||||| || | ||| |||| |||||| ||||| ||||||||||||||||||||||
Sbjct 21755 CCACCTCTAAGACGAAGGACTAAATGTAACGTAGACTCTTTCTGAATATTATAGTCAGCC 21696
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
| || | ||| || || | |||||||| ||||||||||| | ||||||||| || ||
Sbjct 21695 AATGTGCGACCATCCTCCAACTGTTTTCCGGCAAAAATTAGACGCTGTTGATCTGGCGGA 21636
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|| ||||| ||||| ||||| || || || |||| ||| | ||||| |||||| |||
Sbjct 21635 ATACCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGTTCAACC 21576
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
|| || || || ||||| || ||||| |||||||| || || ||||||
Sbjct 21575 TCAAGAGTGATGGTCTTGCCCGTAAGGGTTTTTACGAAAATTTGCATT 21528
>seq4
Length=3596895
Score = 152 bits (168), Expect = 1e-31
Identities = 174/234 (74%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || || | ||| | ||| || | ||| | |||||| || ||||| || || || ||
Sbjct 3259398 ATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCG 3259339
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| | || | |||||||| ||||| || || ||||| |||| | |||||||| ||
Sbjct 3259338 GACAAGGTGCGTCCGTCTTCCAGTTGCTTACCGGCAAAGATTAAACGTTGTTGATCTGGG 3259279
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| ||||||||||| || |||||||| ||||| |||||||| | |||||| |||||
Sbjct 3259278 GGGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 3259219
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
||||| || || || ||||| ||||| | || || || || || |||||||||
Sbjct 3259218 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTG 3259165
Score = 140 bits (154), Expect = 7e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| |||| |||||| || ||||| |||||||||||||| || || || || | || ||
Sbjct 3259608 AGAACTAAATGTAAAGTGGATTCCTTCTGAATATTATAATCGGACAGTGTGCGTCCATCC 3259549
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| | ||||| ||||| ||||| | | |||||||| || || |||||||| |||||
Sbjct 3259548 TCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCT 3259489
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
||||| || ||||| ||||| || | |||||| ||| || ||||| | || || ||
Sbjct 3259488 TGAATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTT 3259429
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || | ||||| || || ||||||||
Sbjct 3259428 TTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 3259397
>seq15
Length=2140121
Score = 131 bits (144), Expect = 4e-25
Identities = 150/202 (74%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421
||| || || || ||||| || ||||| || | || | ||| ||||||| |||||||||
Sbjct 600247 TGTTGACTCCTTTTGAATGTTGTAGTCGGACAAGGTGCGACCATCTTCTAATTGTTTTCC 600306
Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481
|| || || | | |||||| || || || || || ||||| || || || || |||||
Sbjct 600307 GGCGAAGATCAAACGCTGTTGGTCTGGGGGGATACCCTCTTTGTCTTGGATTTTAGCTTT 600366
Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
|||||||| | ||| || ||| || ||||||| || || ||||||||||| | ||
Sbjct 600367 GACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTGATGGTCTTACCAGTTAAGGT 600426
Query 104542 TTTTACAAATATCTGCATTTTG 104563
||| || || ||||||||| ||
Sbjct 600427 TTTGACGAAAATCTGCATTCTG 600448
>seq1
Length=5074932
Score = 125 bits (138), Expect = 2e-23
Identities = 395/600 (66%), Gaps = 24/600 (4%)
Strand=Plus/Minus
Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935
||||||||| || || |||||| |||| || ||| | ||||| || || || | ||
Sbjct 4720052 TGATGGTATTGTGAATGAAAATTTAGTTGAACGCTTCAGCCAAGAAGTGCAAGTTACAGA 4719993
Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995
|| | || || || ||||| || || ||||| |||||| | ||||| || ||||| ||
Sbjct 4719992 GGCACGTTGCTTCTATGGATTTCAAATTGCTATGGAAAATGTGCATTCTGAAATGTATAG 4719933
Query 268996 TCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACT-ATTTTCTTCTA 269054
| ||||||| ||||| ||||| | ||| || ||| |||| ||| ||| |||
Sbjct 4719932 TATATTAATTGATACGTATATTAAGGATTCGAAACAAA-GAAATTACTTATTCAACGCTA 4719874
Query 269055 T-GAGAACTATGGACTGTGTGAGaaaa----aaaTCTGAATGGGCTCTGAAATGGATAAA 269109
| |||| | ||| ||| | | ||| || |||| ||||| || |||||
Sbjct 4719873 TTGAGA-CAATGC-CTGCG---GTAAAGCGTAAGGCTGATTGGGCACTTGCTTGGATTTC 4719819
Query 269110 CGATAGCGCGCCTTAC---GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATT 269166
|| || | || || ||| | || |||| ||||||||||| ||||| || ||
Sbjct 4719818 TTCTAAGTCGGCCAACTTTGGTGAACGTGTAATTGCATTTGCCGCTGTTGAAGGCATTTT 4719759
Query 269167 CTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATT 269226
||| || |||||| | ||||||||| | |||||| | || | ||||| || ||
Sbjct 4719758 CTTCAGTGGCAGTTTTGCTTCGATCTTTTGGCTTAAGAAACGCGGTTTAATGCCTGGCTT 4719699
Query 269227 AACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTT 269286
|| || ||||| ||| | || | || || ||| |||| || |||||||| |||||
Sbjct 4719698 GACATTTTCTAATGAACTAATCTCACGAGATGAGGGTCTACATTGTGACTTCGCATGTTT 4719639
Query 269287 ATTATTTACTAATTATCTTTCACACAAACCTTCTCAAGATAGAGTATACGAAATTAT--- 269343
| || | | || || | ||| ||||| | | || || | ||||| ||
Sbjct 4719638 A--ATGTTCCAA-CATTTGATACAAAAACCAAGTAATGAACGAATTGTTGAAATAATTTC 4719582
Query 269344 AGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTAT 269403
||| ||||||| | | || |||||| |||| || ||| | | | || | ||
Sbjct 4719581 AGA---AGCTGTTACAATTGAGCAAGAATTCTTAACTGACGCTTTGCCGGTTAATTTAAT 4719525
Query 269404 CGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGT 269463
|||||||||| | ||| ||| || ||||| | || || ||||| | ||||| ||
Sbjct 4719524 CGGTATGAATTGTAAACTAATGTCTGATTATATCGAATTTGTGGCTGATCGTTTGCTTGT 4719465
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1150864396534184
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |