Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq28 185 1e-41 >seq28 Length=1372515 Score = 185 bits (204), Expect = 1e-41 Identities = 308/441 (70%), Gaps = 12/441 (3%) Strand=Plus/Plus Query 6801 TCGAGTTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAG 6860 ||| ||||| |||||| ||| |||| ||||||| ||| | ||| ||||| || | Sbjct 389865 TCGTGTTAACTGTTCTGTTAGCGCTTCAATATGATTATTATAGACATGTGCATCACCCAA 389924 Query 6861 CGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAA 6920 || || | || || ||||| | |||| | |||||||| | || || | ||| Sbjct 389925 AGTGTGGACGAAATCCCCTGGCCGGAGATCAGTAATATGAGCAATCATGTAGGTAAGTAA 389984 Query 6921 TGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACA 6980 || || || || | |||||| |||||||| |||||||| || || | ||| || | Sbjct 389985 AGCGTACGAGGCAATATTAAATGGTACACCCAATCCCATGTCAGCACTGCGTTGGTATAA 390044 Query 6981 TTGACAAGATAA---AATATTGTCTATAGCATAAAATTGACACAATACATGACATGGAGG 7037 |||||||||||| |||| | | || ||||||| | |||||| || || Sbjct 390045 TTGACAAGATAACTCTCCATTGGC---AACAAAAAATTGTGTAAGGCAATGACAAGGTGG 390101 Query 7038 TAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATT 7097 || | | ||| ||||| |||||||||||||| ||||| |||||||| |||||| Sbjct 390102 TAGAGCCATTTGAGGAATATCGACTGGATTCCAAGCAGACATTATAATACGTCGATCATT 390161 Query 7098 TGGATTTGTTTTTAATTTTGTTATAATTATT---TGTAATTGATCTATACCCTGACCTTC 7154 |||| |||||| | | | ||| ||||| | || | |||||||||||||| | ||| Sbjct 390162 TGGA-TTGTTTCTGACTGTGT--CAATTACTTGCTGAAGTTGATCTATACCCTCATCTTT 390218 Query 7155 ATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAAT 7214 ||| | | |||||| | || || || |||||||| | ||| ||||| ||||||| Sbjct 390219 GTAAGTGTCCTTGCAATTTCTGTACTTGGCCCCAAAATGACGCCACTGAAAACCATAAAC 390278 Query 7215 AGGACCTAAATCACCTTCTTC 7235 || |||| |||||||||||| Sbjct 390279 TGGGCCTAGATCACCTTCTTC 390299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595602382816800