Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29]
36,198 sequences; 471,780,370 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq28 185 1e-41
>seq28
Length=1372515
Score = 185 bits (204), Expect = 1e-41
Identities = 308/441 (70%), Gaps = 12/441 (3%)
Strand=Plus/Plus
Query 6801 TCGAGTTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAG 6860
||| ||||| |||||| ||| |||| ||||||| ||| | ||| ||||| || |
Sbjct 389865 TCGTGTTAACTGTTCTGTTAGCGCTTCAATATGATTATTATAGACATGTGCATCACCCAA 389924
Query 6861 CGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAA 6920
|| || | || || ||||| | |||| | |||||||| | || || | |||
Sbjct 389925 AGTGTGGACGAAATCCCCTGGCCGGAGATCAGTAATATGAGCAATCATGTAGGTAAGTAA 389984
Query 6921 TGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACA 6980
|| || || || | |||||| |||||||| |||||||| || || | ||| || |
Sbjct 389985 AGCGTACGAGGCAATATTAAATGGTACACCCAATCCCATGTCAGCACTGCGTTGGTATAA 390044
Query 6981 TTGACAAGATAA---AATATTGTCTATAGCATAAAATTGACACAATACATGACATGGAGG 7037
|||||||||||| |||| | | || ||||||| | |||||| || ||
Sbjct 390045 TTGACAAGATAACTCTCCATTGGC---AACAAAAAATTGTGTAAGGCAATGACAAGGTGG 390101
Query 7038 TAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATT 7097
|| | | ||| ||||| |||||||||||||| ||||| |||||||| ||||||
Sbjct 390102 TAGAGCCATTTGAGGAATATCGACTGGATTCCAAGCAGACATTATAATACGTCGATCATT 390161
Query 7098 TGGATTTGTTTTTAATTTTGTTATAATTATT---TGTAATTGATCTATACCCTGACCTTC 7154
|||| |||||| | | | ||| ||||| | || | |||||||||||||| | |||
Sbjct 390162 TGGA-TTGTTTCTGACTGTGT--CAATTACTTGCTGAAGTTGATCTATACCCTCATCTTT 390218
Query 7155 ATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAAT 7214
||| | | |||||| | || || || |||||||| | ||| ||||| |||||||
Sbjct 390219 GTAAGTGTCCTTGCAATTTCTGTACTTGGCCCCAAAATGACGCCACTGAAAACCATAAAC 390278
Query 7215 AGGACCTAAATCACCTTCTTC 7235
|| |||| ||||||||||||
Sbjct 390279 TGGGCCTAGATCACCTTCTTC 390299
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595602382816800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |