Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq1399 127 1e-24 >seq1399 Length=54134 Score = 127 bits (140), Expect = 1e-24 Identities = 190/270 (70%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 3875 GGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAAAATATGCAA 3934 ||||| ||||| | ||||| || || || || || |||||||| ||||||||||| ||| Sbjct 45472 GGTGTTCATTTCGTTATGGCAGATGGAGGATTTTCAGTTGAGGGCCAAGAAAATATCCAA 45413 Query 3935 GAAATGTTATCGAAAAAGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCATACGA 3994 ||||| | || || | |||| || |||||||||||||| ||||||| ||| | || Sbjct 45412 GAAATTCTTTCTAAGCAACTGTACTTATGTCAATGTTTAATGGCATTGAAAATCCTTCGG 45353 Query 3995 ATTGGTGGTCATTGTGTTATCAAATTTTTCGATATATTTACACCTTTTAGTGCTGGTTTA 4054 || ||| || | || |||||| || ||| |||| || || |||||| || | Sbjct 45352 GTTAATGGCAGTTTTCTTTGCAAATTATTTGATTTATTCACGCCATTTAGTATAGGACTG 45293 Query 4055 GTGTATTTGATGTATAGATCTTTTAATCGTATTTGTATTTTCAAACCACATTCATCGCGA 4114 | | ||| ||||||| || |||| ||| || | ||| || || || || || Sbjct 45292 ATATTTTTAATGTATAAATGTTTTGATCAGATATCTATATTGAAGCCTAATAGTAGTAGA 45233 Query 4115 CCGGCCAATTCTGAAAGATATTTGGTGTGT 4144 ||||| ||||| || | ||||| || ||| Sbjct 45232 CCGGCAAATTCAGAGCGTTATTTAGTTTGT 45203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276431594749594