Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq9 122 5e-23 seq1644 120 2e-22 seq1007 120 2e-22 seq10112 116 2e-21 seq1263 116 2e-21 seq28871 113 2e-20 seq102 113 2e-20 seq3718 111 8e-20 >seq9 Length=3022361 Score = 122 bits (134), Expect = 5e-23 Identities = 86/98 (88%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 11433 ATAGAATTAATAAAA-AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 ||| || ||| |||| ||| |||||||||||| |||||||||| |||||||||||| Sbjct 1291820 ATAAAAATAACAAAATAATTGTATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGT 1291879 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||| |||||||||||||||||||| Sbjct 1291880 TATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 1291917 Score = 116 bits (128), Expect = 2e-21 Identities = 81/92 (88%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 11441 AATAAAAAATCA---AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||||||||| | ||||||||||| |||||||||| |||||||||||||||||| Sbjct 1294546 AATAAAAAATATTTGATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAG 1294605 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| |||||||||||||||||||| Sbjct 1294606 CACGACGCTCTAACCAACTGAGCTAATGGGCC 1294637 >seq1644 Length=43815 Score = 120 bits (132), Expect = 2e-22 Identities = 88/102 (86%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 11429 AAATATAG-AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||||||| || || ||| | | || ||||||||||| |||||||||| |||||||| Sbjct 4413 AAATATATTAAATACAAAATATTGAATTTGGCCCATGAGGGGATCGAACCCGCGACCTTC 4472 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| |||||||||||||||||||| Sbjct 4473 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 4514 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 8723 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 8664 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 8663 CTGAGCTAATGGGCC 8649 >seq1007 Length=70443 Score = 120 bits (132), Expect = 2e-22 Identities = 88/103 (85%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 11427 GGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 ||||| ||||| | ||||| | || |||||||||| |||||||||| ||||||| Sbjct 56656 GGAAAGTGAGAATAATTAAAATACTAATGTGGCCCATGAGGGGATCGAACCCGCGACCTT 56597 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||| |||||||||||||||||||| Sbjct 56596 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 56554 Score = 114 bits (126), Expect = 7e-21 Identities = 77/86 (90%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11446 AAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||| | ||||| ||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 43252 AAAGTAAAATTATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 43193 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 43192 GCTCTAACCAACTGAGCTAATGGGCC 43167 >seq10112 Length=5886 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||| | | || ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 1216 AAATATTGAATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 1275 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 1276 GCTCTAACCAACTGAGCTAATGGGCC 1301 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 4372 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 4313 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 4312 CTGAGCTAATGGGCC 4298 >seq1263 Length=54249 Score = 116 bits (128), Expect = 2e-21 Identities = 79/89 (89%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| || ||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 29003 AATAAAATATT---TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 29059 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 29060 GACGCTCTAACCAACTGAGCTAATGGGCC 29088 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 25404 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 25463 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 25464 TGAGCTAATGGGCC 25477 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 28315 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 28374 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 28375 TGAGCTAATGGGCC 28388 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 29789 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 29848 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 29849 TGAGCTAATGGGCC 29862 >seq28871 Length=750 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 527 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 586 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 587 TGAGCTAATGGGCC 600 >seq102 Length=575840 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 16226 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 16285 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 16286 TGAGCTAATGGGCC 16299 >seq3718 Length=15993 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 9286 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 9227 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 9226 TGAGCTAATGGGCCG 9212 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261375839725048