Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq4 116 3e-21 seq138 104 2e-17 >seq4 Length=3596895 Score = 116 bits (128), Expect = 3e-21 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || || | ||| ||||| |||||||| | |||||| || || || | | Sbjct 3261077 AAAATTTGCATACCACCACGCAAACGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATG 3261018 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 ||||||||| || ||| || |||| ||| || ||| | ||||| | | ||| Sbjct 3261017 TTATAATCGGACAGGGTGCGACCGTCTTCCAACTGCTTACCGGCGAAGATCAGACGTTGT 3260958 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| ||||| ||||| || || | || || ||||| ||| | | || || Sbjct 3260957 TGATCTGGTGGAATGCCTTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCT 3260898 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | | || || || | ||||||||||| ||||| || || ||||| ||||| ||||| Sbjct 3260897 GAGGGCTCTACTTCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 3260839 Score = 113 bits (124), Expect = 4e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || || | ||| || | || || || ||||| |||||||| || | |||| Sbjct 3259631 TTTGCATACCACCACGCAAGCGTAGAACTAAATGTAAAGTGGATTCCTTCTGAATATTAT 3259572 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 ||||| || ||| |||||||| |||||| || | || || || | ||| |||| Sbjct 3259571 AATCGGACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGAT 3259512 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| || || ||||| || || | |||||| || ||||| | | ||| || | Sbjct 3259511 CTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATAGTATCGGAAG 3259452 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || || | |||||||||||||| || | |||||| || || |||||||||| Sbjct 3259451 GCTCAACCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCATGC 3259395 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| |||||||| | |||||| || || || | |||||||||| || ||| Sbjct 3260295 CGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGTCCG 3260236 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| |||||| ||| | ||||| || | ||| |||||||| ||||| || || || Sbjct 3260235 TCTTCCAACTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGAATTCCCTCCTTA 3260176 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| ||| | | || || | | | || || || | |||||| Sbjct 3260175 TCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACTTCCAAGGTGATG 3260116 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| || || ||||| ||||| ||||| Sbjct 3260115 GTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 3260081 Score = 102 bits (112), Expect = 7e-17 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || || | ||| ||||| |||||||| | ||| ||||||||||| | | Sbjct 3261305 AAAATTTGCATACCACCACGCAAACGCAATACCAAGTGAAGAGTTGATTCCTTTTGAATG 3261246 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || || ||| ||||||| || || ||| | ||||| || | ||| Sbjct 3261245 TTGTAGTCTGACAGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGT 3261186 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| ||||| ||||| || || | || || || ||||| | | ||||| Sbjct 3261185 TGATCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCTATGGTGTCG 3261126 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | ||||||||||| || || || || ||||| || || ||||| Sbjct 3261125 GATGGTTCAACTTCCAAGGTGATGGTTTTGCCGGTGAGGGTCTTCACGAAAATTTGCAT 3261067 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | ||||| ||||| || | ||| |||||| || ||| || ||| Sbjct 3259377 ACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTCTTCC 3259318 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || || ||| |||||||||| | ||| |||||||| || || ||||||||||| | | Sbjct 3259317 AGTTGCTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCTTGA 3259258 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || || || || | | ||| || | | || || || | |||||||| || Sbjct 3259257 ATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTG 3259198 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | || ||||| ||||| ||||| Sbjct 3259197 CCAGTCAAGGTCTTCACGAAGATTTGCAT 3259169 >seq138 Length=433312 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | || || || || ||||| || || || | ||||| || | Sbjct 21755 CCACCTCTAAGACGAAGGACTAAATGTAACGTAGACTCTTTCTGAATATTATAGTCAGCC 21696 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| |||||||| |||||||||| |||| |||| | || |||||||| ||| Sbjct 21695 AATGTGCGACCATCCTCCAACTGTTTTCCGGCAAAAATTAGACGCTGTTGATCTGGCGGA 21636 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| || || | |||||| ||||| || | | ||| || | | || || Sbjct 21635 ATACCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGTTCAACC 21576 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| || || ||||| ||||| || || || ||||| Sbjct 21575 TCAAGAGTGATGGTCTTGCCCGTAAGGGTTTTTACGAAAATTTGCAT 21529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448088359439280