Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq618 176 7e-40 seq160 107 3e-19 >seq618 Length=113051 Score = 176 bits (194), Expect = 7e-40 Identities = 199/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||||||||| | | | | || ||||||||||| ||||| || ||||| ||||| Sbjct 99596 GCTAAGCGTCATCGTAAAGTTTTACGTGATAACATCCAGGGAATTACTAAGCCTGCTATT 99655 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||||||||||| || || || ||| | ||||| || | |||||||| | Sbjct 99656 CGGCGTTTGGCTCGTCGTGGAGGTGTAAAACGTATATCTGGTTTAATATATGAAGAAACA 99715 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| || || | || | ||| ||||||| |||||| || |||||| ||| Sbjct 99716 CGTGGTGTCTTAAAAGTATTTTTGGAGAATGTTATCCGTGATGCAGTCACCTATACTGAG 99775 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||||||| | ||||| || || | |||||| | || ||||| ||||| | ||||| Sbjct 99776 CACGCTAAAAGGAAGACAGTTACAGCAATGGATGTTGTATATGCTTTGAAGAGACAAGGA 99835 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | ||||| || || ||||| Sbjct 99836 CGTACCTTGTATGGATTCGGCGGTTAA 99862 >seq160 Length=384457 Score = 107 bits (118), Expect = 3e-19 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| ||||| || || || || || ||| |||||||||||||| Sbjct 254396 CTACGTGATAACATCCAAGGTATCACAAAACCGGCCATTCGCCGTTTGGCTCGTCGTGGT 254337 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 || || || ||| | ||||||||| | |||||||| | |||| ||| |||||| Sbjct 254336 GGTGTAAAACGTATTTCTGGATTGATTTATGAAGAAACGCGTGGTGTATTGAAG 254283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79042103915214