Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_006656.1 Length=12682 Score E Sequences producing significant alignments: (Bits) Value seq3654 80.6 2e-11 seq762 78.8 8e-11 >seq3654 Length=18860 Score = 80.6 bits (88), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 8148 TTTTTTCGAGGTAGGTGTCTTTAGACCACTATAACTTCAATTCTACTGAATGTTTTTAGC 8207 |||||||||||| || || || ||| || ||||| ||||||| |||||||||||| Sbjct 3216 TTTTTTCGAGGTGGGGGTGTTCAGAATGCTCTAACTCATGTTCTACTCAATGTTTTTAGC 3157 Query 8208 TCAAAATTTAACTGTACACTCTTGAAATATGTA---TaaaaaaaTGGTAGAAAGTTCAAA 8264 | |||||||| | || ||| | ||||||| || ||| ||||| | ||| | ||| Sbjct 3156 TTAAAATTTATATTTATACTGTCGAAATATATATGTTAATAAAAT-TAATGAAGCTTAAA 3098 Query 8265 GTTCCATGTCTTTATTGGTC 8284 | || || | |||| ||||| Sbjct 3097 GATCTATCTATTTACTGGTC 3078 >seq762 Length=97737 Score = 78.8 bits (86), Expect = 8e-11 Identities = 99/132 (75%), Gaps = 3/132 (2%) Strand=Plus/Minus Query 8148 TTTTTTCGAGGTAGGTGTCTTTAGACCACTATAACTTCAATTCTACTGAATGTTTTTAGC 8207 ||||||||||| ||| || || ||| | || ||||| ||||| ||| |||||||| Sbjct 81314 TTTTTTCGAGGCAGGGGTGTTCAGAACGCTGTAACTCATGTTCTA-AAAATATTTTTAGC 81256 Query 8208 TCAAAATTTAACTGTACACTCTTGAAATATGTATaaaaaaaTGGT-AGAAAGTTCAAAGT 8266 | |||||||| | || || | ||||||||| | || ||||| | | |||||| ||||| Sbjct 81255 TTAAAATTTATATTTATACAGTCGAAATATGTTTTAATAAATGATAATAAAGTT-AAAGT 81197 Query 8267 TCCATGTCTTTA 8278 || || | |||| Sbjct 81196 TCTATTTATTTA 81185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40450720643312