Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_006661.1 Length=11186 Score E Sequences producing significant alignments: (Bits) Value seq6390 84.2 2e-12 seq3346 84.2 2e-12 seq87 82.4 5e-12 seq201 80.6 2e-11 seq58 80.6 2e-11 seq22 80.6 2e-11 seq31358 78.8 7e-11 seq855 78.8 7e-11 seq243 78.8 7e-11 >seq6390 Length=8195 Score = 84.2 bits (92), Expect = 2e-12 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4310 TGGATCATTCCATGTCAAATTGACCTACAGTTGGAATTGACCCCTTTTGATATGGATAAA 4369 ||| |||||||||||||||| |||| | |||| || |||||| | ||| | || || Sbjct 1816 TGGGTCATTCCATGTCAAATCGACCAATAGTTAGACGCGACCCCCATCGATTCGAATGAA 1757 Query 4370 TTTTGTTCAGAAATTTTCTTTTATCATATAACGAATTTCTGCCAGAGGA 4418 ||||| | || |||| | |||||||| |||||| |||||||| |||| Sbjct 1756 TTTTGGTGTAAAGTTTTGTCTTATCATAAAACGAAGTTCTGCCAAAGGA 1708 Score = 78.8 bits (86), Expect = 7e-11 Identities = 78/101 (77%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 5051 CAGAAGTTCATTATATGATAAAAGAAAATTTCTGACCAAAATTTATCCATATCAAAAGGG 5110 ||||| ||| || |||||||| | |||| || ||||||||| || | ||| | ||| Sbjct 1716 CAGAACTTCGTTTTATGATAAGACAAAACTTTACACCAAAATTCATTCGAATCGATGGGG 1775 Query 5111 GTCAATTCCAACTGTAGGTCAATTTGACATGGAATGACCCA 5151 ||| || |||| | |||| |||||||||||||||||||| Sbjct 1776 GTCGCGTCTAACTATTGGTCGATTTGACATGGAATGACCCA 1816 >seq3346 Length=18831 Score = 84.2 bits (92), Expect = 2e-12 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4310 TGGATCATTCCATGTCAAATTGACCTACAGTTGGAATTGACCCCTTTTGATATGGATAAA 4369 ||| |||||||||||||||| |||| | |||| || |||||| | ||| | || || Sbjct 11925 TGGGTCATTCCATGTCAAATCGACCAATAGTTAGACGCGACCCCCATCGATTCGAATGAA 11866 Query 4370 TTTTGTTCAGAAATTTTCTTTTATCATATAACGAATTTCTGCCAGAGGA 4418 ||||| | || |||| | |||||||| |||||| |||||||| |||| Sbjct 11865 TTTTGGTGTAAAGTTTTGTCTTATCATAAAACGAAGTTCTGCCAAAGGA 11817 Score = 78.8 bits (86), Expect = 7e-11 Identities = 78/101 (77%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 5051 CAGAAGTTCATTATATGATAAAAGAAAATTTCTGACCAAAATTTATCCATATCAAAAGGG 5110 ||||| ||| || |||||||| | |||| || ||||||||| || | ||| | ||| Sbjct 11825 CAGAACTTCGTTTTATGATAAGACAAAACTTTACACCAAAATTCATTCGAATCGATGGGG 11884 Query 5111 GTCAATTCCAACTGTAGGTCAATTTGACATGGAATGACCCA 5151 ||| || |||| | |||| |||||||||||||||||||| Sbjct 11885 GTCGCGTCTAACTATTGGTCGATTTGACATGGAATGACCCA 11925 >seq87 Length=660833 Score = 82.4 bits (90), Expect = 5e-12 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 4298 ATAAAATATAGTTGGATCATTCCATGTCAAATTGACCTACAGTTGGAATTGACCCCTTTT 4357 || || |||| | || |||||||||||||||| ||| | ||||||| |||||| Sbjct 225961 ATCAACTATATTAGGGTCATTCCATGTCAAATCGACAAATAGTTGGACGCGACCCCCACC 225902 Query 4358 GATATGGATAAATTTTGTTCAGA-AATTTTCTTTTATCATATAACGAATTTCTGCCAGAG 4416 ||| ||||| ||||||| |||| | |||| | |||||| |||||| |||||||| || Sbjct 225901 GATTTGGATGAATTTTG-GCAGAGAGTTTTGCCTCATCATAAAACGAAGTTCTGCCAAAG 225843 Query 4417 GA 4418 || Sbjct 225842 GA 225841 >seq201 Length=315963 Score = 80.6 bits (88), Expect = 2e-11 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4310 TGGATCATTCCATGTCAAATTGACCTACAGTTGGAATTGACCCCTTTTGATATGGATAAA 4369 ||| ||||||||||| |||| || | ||||||| |||||| ||| | ||||| Sbjct 54183 TGGGTCATTCCATGTAAAATCGAAAAATAGTTGGACGCGACCCCCACCGATTCGAATAAA 54124 Query 4370 TTTTGTTCAGAAATTTTCTTTTATCATATAACGAATTTCTGCCAGAGGA 4418 ||||| | | || |||| | |||||||| |||||| |||||||| |||| Sbjct 54123 TTTTGGTGAAAAGTTTTGTCTTATCATAAAACGAAGTTCTGCCAAAGGA 54075 >seq58 Length=959743 Score = 80.6 bits (88), Expect = 2e-11 Identities = 79/102 (77%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 4312 GATCATTCCATGTCAAATTGACCTACAGTTGGAATTGACCCCTTTTGATATGGATAAATT 4371 |||||||||||||||||| ||| | ||||||| |||||| ||| | || |||| Sbjct 147458 GATCATTCCATGTCAAATCGACAAATAGTTGGACGCGACCCCGACCGATTCGAATGAATT 147399 Query 4372 TTGTTCAGAAATTTTCTTTTATCATATAACGAATTTCTGCCA 4413 ||| | | || |||| | |||||||| |||||| |||||||| Sbjct 147398 TTGGTAAAAAGTTTTGTCTTATCATAAAACGAAGTTCTGCCA 147357 >seq22 Length=1853830 Score = 80.6 bits (88), Expect = 2e-11 Identities = 95/126 (75%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 4292 TTAATAATAAAATATAGTTGGATCATTCCATGTCAAATTGACCTACAGTTGGAATTGACC 4351 || ||| | ||| || ||| |||||||||||||||| | | | ||||||| |||| Sbjct 510373 TTTATAGTTAAAAGTAAATGGGTCATTCCATGTCAAATCGGCAAATAGTTGGACGCGACC 510432 Query 4352 CCTTTTGATATGGATAAATTTTGTTCAGAAA-TTTTCTTTTATCATATAACGAATTTCTG 4410 || ||| ||||| ||||||| |||||| |||| | | |||||| |||||| ||||| Sbjct 510433 CCCACCGATTTGGATGAATTTTG-GCAGAAAGTTTTGTCTCATCATAGAACGAAGTTCTG 510491 Query 4411 CCAGAG 4416 ||| || Sbjct 510492 CCAAAG 510497 Score = 78.8 bits (86), Expect = 7e-11 Identities = 91/120 (76%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 5051 CAGAAGTTCATTATATGATAAAAGAAAA-TTTCTGACCAAAATTTATCCATATCAAAAGG 5109 ||||| ||| || |||||| | | |||| |||||| |||||||| ||||| ||| || Sbjct 510491 CAGAACTTCGTTCTATGATGAGACAAAACTTTCTG-CCAAAATTCATCCAAATCGGTGGG 510433 Query 5110 GGTCAATTCCAACTGTAGGTCAATTTGACATGGAATGACCCAACTATATTTTATTATTAA 5169 |||| ||||||| | | | |||||||||||||||||||| || ||| | ||| || Sbjct 510432 GGTCGCGTCCAACTATTTGCCGATTTGACATGGAATGACCCATTTACTTTTAACTATAAA 510373 >seq31358 Length=668 Score = 78.8 bits (86), Expect = 7e-11 Identities = 82/108 (76%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 4311 GGATCATTCCATGTCAAATTGACCTACAGTTGGAATTGACCCCTTTTGATATGGATAAAT 4370 ||||||||||||||||||| ||| | ||||||| |||||| ||| ||||| ||| Sbjct 47 GGATCATTCCATGTCAAATCGACAAATAGTTGGACGCGACCCCGACCGATTTGGATGAAT 106 Query 4371 TTTGTTCAGAAATTTTCTTTTATCATATAACGAATTTCTGCCAGAGGA 4418 |||| | | ||| | | |||||| |||||| |||||||| |||| Sbjct 107 TTTGGCAAAGAGCTTTGTCTCATCATAAAACGAAGTTCTGCCAAAGGA 154 >seq855 Length=87576 Score = 78.8 bits (86), Expect = 7e-11 Identities = 82/108 (76%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 4311 GGATCATTCCATGTCAAATTGACCTACAGTTGGAATTGACCCCTTTTGATATGGATAAAT 4370 ||||||||||||||||||| ||| | ||||||| |||||| ||| ||||| ||| Sbjct 2460 GGATCATTCCATGTCAAATCGACAAATAGTTGGACGCGACCCCCACCGATTTGGATGAAT 2519 Query 4371 TTTGTTCAGAAATTTTCTTTTATCATATAACGAATTTCTGCCAGAGGA 4418 |||| | | ||| | | |||||| |||||| |||||||| |||| Sbjct 2520 TTTGGCAAAGAGCTTTGTCTCATCATAAAACGAAGTTCTGCCAAAGGA 2567 >seq243 Length=258482 Score = 78.8 bits (86), Expect = 7e-11 Identities = 83/107 (78%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 4311 GGATCATTCCATGTCAAATTGACCTACAGTTGGAATTGACCCCTTTTGATATGGATAAAT 4370 || ||||||||||||||| ||| | ||||||| ||||||| ||| | || ||| Sbjct 215569 GGGTCATTCCATGTCAAACCGACAAATAGTTGGACGCGACCCCTACCGATTCGAATGAAT 215628 Query 4371 TTTGTTCAGAAA-TTTTCTTTTATCATATAACGAATTTCTGCCAGAG 4416 |||| | ||||| |||| | |||||||| |||||| |||||||| || Sbjct 215629 TTTGGT-AGAAAGTTTTGTCTTATCATAAAACGAAGTTCTGCCAAAG 215674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35665470122800