Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1 217 2e-51 >seq1 Length=5074932 Score = 217 bits (240), Expect = 2e-51 Identities = 478/712 (67%), Gaps = 10/712 (1%) Strand=Plus/Plus Query 21290 CCCAGTTCTGATAAT-AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACA 21348 |||||||| || || || | ||| || |||||||| ||||| | | |||||| || ||| Sbjct 4719456 CCCAGTTC-GACAAGCAAACGATCAGCCACAAATTCGATATAATCAGACATTAGTTTACA 4719514 Query 21349 ATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGAC 21408 |||||||||||| || || || || | ||| | || || || || || || | || Sbjct 4719515 ATTCATACCGATTAAATTAACCGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTGTAAC 4719574 Query 21409 GGCTTCAACAATTATATTTATTATCC-TAGATGTACTAGGGGGATACAATAATTGTTTAA 21467 ||||| |||||| | | || | | || |||| || | | || |||| | Sbjct 4719575 AGCTTCTGAAATTATTTCAACAATTCGTTCAT-TACTTGGTTTTTGTATCAAATGTTGGA 4719633 Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 |||| |||||||| || |||||||| | ||| ||||| | |||| ||||||||||| Sbjct 4719634 ACATTAAACATGCGAAGTCACAATGTAGACCCTCATCTCGTGAGATTAGTTCATTAGAAA 4719693 Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCC 21585 |||| || || |||||||| || | || || | |||||| || || ||||| ||| | Sbjct 4719694 ATGTCAAGCCAGGCATTAAACCGCGTTTCTTAAGCCAAAAGATCGAAGCAAAACTGCCAC 4719753 Query 21586 TGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTC 21645 || ||||||||||| ||||| || |||||||||| || |||||||| | | | Sbjct 4719754 TG--AAGAAAATGCCTTCAACAGCGGCAAATGCAATTACACGTTCACCAAAGTTGGCCGA 4719811 Query 21646 TTTATCCAATATCCATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTAT 21704 ||| | ||||| |||||| | ||||| ||||| || | ||||| | Sbjct 4719812 CTTAGAAGAAATCCAAGCAAGTGCCCAATCAGCCTTACGCTTTACCGCAGGC-ATTGTCT 4719870 Query 21705 CAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNN 21764 ||||||| || || | | |||| ||| | ||| | || Sbjct 4719871 CAATAGCGTTGAATAAGTAATTTCTTTGTTTCGAATCCTTAATATACGTATCAATTAATA 4719930 Query 21765 NACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTG 21824 |||||||||||||||||| | |||||| || || || |||||||| || || || | || Sbjct 4719931 TACTATACATTTCAGAATGCACATTTTCCATAGCAATTTGAAATCCATAGAAGCAACGTG 4719990 Query 21825 CCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCAT 21884 |||||| | ||| || || || |||| | | || |||||||| || || |||| Sbjct 4719991 CCTCTGTAACTTGCACTTCTTGGCTGAAGCGTTCAACTAAATTTTCATTCACAATACCAT 4720050 Query 21885 CACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATT 21944 || ||||| || || || || | | | || |||| |||||| ||||| || | Sbjct 4720051 CAGATGCGGCGAAGAAGGCTAACACGTGTGAAATGAAATGTCGTTCATTATCAGTGAGAC 4720110 Query 21945 TTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 | |||||| | |||||| || | ||||||||| ||| |||||| || Sbjct 4720111 GTGCCCAATCATCCATATCTTTAGAAAGATCTACTTCCTCAACTGTCCAGAA 4720162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531660128185520