Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq11 480 1e-130 seq1 279 6e-70 >seq11 Length=2963766 Score = 480 bits (532), Expect = 1e-130 Identities = 1255/1888 (66%), Gaps = 46/1888 (2%) Strand=Plus/Minus Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045 ||||||| || ||||| || | | | ||||||||||| || | || ||||| || Sbjct 1983220 TTGTCCACAGTAAATTGTATAGCATTTGCGGCGGGTTTCGTGCGCAAGTAATACATGCCA 1983161 Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62105 ||||| ||||| |||| |||||||| || ||| || |||||| ||| | || Sbjct 1983160 GTTTTGAGACCTGCCTTCCAACCGTAAAAGTGTATAGAAGTAAGTTTGCCATAGTTTGGT 1983101 Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165 || || | || || || | || ||||||||||||||||| || || | ||||||||| Sbjct 1983100 TCAGCCACGTGTATGTTGAACGACTGACTTTGATCGATGAAAGCGCCACGATCTGCAGCC 1983041 Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 62224 ||||| || || || | ||| ||||||| |||||| || || |||| || ||| Sbjct 1983040 ATTTTGATTGAGGTTTTCACAGAAATCTCCCAAACAGTTTTGTATAAATCGCGTA-TATG 1982982 Query 62225 TTCTGGAA-GGTTTGTAT--TCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 62281 | ||| | || || || | || || || || | | | ||||| |||| || || Sbjct 1982981 CTGTGGTATGGATTCAATGTTTTGTATCGAGCCGCGACTAGTTATAATATTATTTTTCAT 1982922 Query 62282 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTC-TAAGGAGATGCGGATTAACTACTT 62340 ||||||| ||| || ||| |||| | | | ||| || || |||| || |||| Sbjct 1982921 ATCATCATCCCACAAACCCAACTCAGTTAGATCGCGTAACAAG-TGATGATTTACAACTT 1982863 Query 62341 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACT 62400 ||||||| || || | || | || || || ||||| || || ||||| | |||| Sbjct 1982862 GAAATTCACCCGAAAGCACACGGCGTGTATAGATATTGGAAGTGTATGGTTCAAATGACT 1982803 Query 62401 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62460 |||| || |||| |||||| || ||||| ||||| ||||| || || | || ||| | Sbjct 1982802 CATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAAGCAGCAAAGAGT 1982743 Query 62461 TTCTAAGACCGTATGTTC--TGATTTTATCTTTTAGA--GGTTCCCAATTCCAAAGATCC 62516 | | || || ||||| | ||||| || || | ||| ||||||||||||||| Sbjct 1982742 TACGAACGCC--ATGTTGCTTAATTTTCTCCTTCAATTCGGT--CCAATTCCAAAGATCA 1982687 Query 62517 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 62576 ||| ||||||||||| ||||| || || |||||| Sbjct 1982686 CTTGGTGTCTTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGGTGAACCTACA 1982627 Query 62577 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62636 ||||| || || | || | || || |||| ||| ||||| | || | ||||| || Sbjct 1982626 TATGTTTCATAAGTGCCATATTTTTCGGCTAATTCGCAACTGGATTCCAGCGCACCATAG 1982567 Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696 ||||| |||||||| || | | ||||| |||||| || || |||||||| Sbjct 1982566 TAAATAGTTTCGAATATTTGTTGATTTAAGCGGAATGCTTCATCACTTTCGTATGGATAA 1982507 Query 62697 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62756 | | ||| || ||||| || || ||||| || ||||||||||| || | |||||| Sbjct 1982506 CGCATTAAAATTAAAGCGTCGGCAAAACCTTGTACGCCAATACCGATGGGACGATGTCTG 1982447 Query 62757 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62816 ||| || | | || || || || ||||||| |||||| ||||| |||||||| | | Sbjct 1982446 AAATTCGATTTCTTTGCCTCCGGTATTGGATAATGATTAATGTCTATGATTTTATTCAAA 1982387 Query 62817 TTTC-TGACAATTACTT--TGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCA 62870 || | || | ||| ||||| || || || ||| ||| | | | | Sbjct 1982386 TTACGTGTAACGGTCTTGGTGACC---TCTTTGAGGCGCTTAAAGTCATACGTTTTCTCG 1982330 Query 62871 TCTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 62930 | | |||||||||||||| || | || || | ||||| || |||||||||| | Sbjct 1982329 GGTGTGACAAACATGTTCAATGCGATCGAAGCTAAGTTACACACAGCTACCTCATCGGGT 1982270 Query 62931 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGT 62990 ||| ||||| | || || || || | |||||||||||| || || || | ||| || Sbjct 1982269 GCCGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGC 1982210 Query 62991 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 63050 |||||||||||| ||||| ||||| ||||| | ||| | || || ||||| || | Sbjct 1982209 TGATTACTCTTTCGATTACAAGCATCTTTATATAACATGTACGGTGTGCCAGTCTCTACT 1982150 Query 63051 TGAGATTCTATAATCGCTTTCCAGACGAC-TCGAGCCTTTA--TTATAGATTTGTATCTC 63107 || ||||| ||||| || ||| | ||| | | || |||| || | ||| | | || Sbjct 1982149 TGCGATTCAATAATGGCAAACCA-AAGACTTTGTGCTTTTACCTTCT-TATTAGCACGTC 1982092 Query 63108 CTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT 63167 ||| || ||| ||| ||||||| ||| ||||| || ||||| || | | || Sbjct 1982091 CTTCCT-GTTCATATTTCAGATACAATTTTTCAAACTCCTCACCCCACACTTCATGTAAA 1982033 Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT--CCTTC-ACTCGTTTC 63224 |||||||||| | || ||||| | |||||| ||| |||| |||| || ||| || Sbjct 1982032 CCAGGACATTTGTGTGGGCACATTAGCGACCAGTCT---TCATTGGCTTCGACACGTCTC 1981976 Query 63225 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63284 ||||| |||||||| ||||| ||||| || | |||||||| | || || || || Sbjct 1981975 ATAAATAGATCAGGTATCCACAGAGCGTAGAACAAATCTCTGGCGCGGTGCTCTTCTTTA 1981916 Query 63285 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63344 || || || || || | ||| | || | | ||||||| |||||| ||||||| ||| Sbjct 1981915 CCGGTGTTTTTCTTCAAATCCAAAAATTCGAATATATCAGCATGCCATGGTTCCAGGTAG 1981856 Query 63345 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63404 ||||| | | || |||||||| || || ||||| | || | || ||||| Sbjct 1981855 ATGGCAAAGGCGCCTGGCCGTTTACCGCCACCTTGATCCACATAACGTGCTACATTATTG 1981796 Query 63405 TAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTT 63464 | |||| || |||||| | | ||| || || | ||||| || || | || | Sbjct 1981795 AACACTCGCAGCATTGGCACCAAACCATTCGAGGTGCCATTTGTGCCCGCAATCGCAGTG 1981736 Query 63465 CCACTGGCACGAAT---AT-TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63520 || | || || || || ||| ||| |||||| || || || || ||| || || Sbjct 1981735 CCTTTCGCGCGTATGCAATGTAC--ATT--TAGACCAATACCACCAGCAGATTTTGAAAT 1981680 Query 63521 TAATGCGCATCG-TTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAA 63579 || || ||| | | | | ||| | | ||||| || ||| ||| || | |||| ||| Sbjct 1981679 CAAAGCACATTGATGTGCAGATGTGA-AAATACCGTCAATGGAATCGTCCACCATGGTAA 1981621 Query 63580 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 63639 ||| || || |||| ||| | | | || | ||| || | || || |||| Sbjct 1981620 GTAAGAAGCATGATGACAATTGCGGCTGTTTGGTGGCAGCAGCGAAGAGTGTCGGCGAAG 1981561 Query 63640 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCC 63699 | || ||||| | || ||||| | ||||| || ||||| |||| || ||||| Sbjct 1981560 CATGTGTAAAATAACGCTCGGAAAGCAAGTTGTATGTTTCAATTGCTGCATCGATATCTT 1981501 Query 63700 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 63759 ||| || || | || || ||||||||||| ||||| |||| ||||| || ||| Sbjct 1981500 CACCATGTATACCGATGGCAACGCGCATTAACATATGCTGTGGTCGCTCAACAATTTTGC 1981441 Query 63760 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 63819 || | || | ||| ||||| ||| | ||||||||||||||||| ||||| || Sbjct 1981440 CATTCAACTTGAGCAAATAGGAACGTTCAAGCGTTTTAAAACCAAAATAATTGTAACCAA 1981381 Query 63820 AGTCTCGTTCGTAAATAATAACCGAGTT 63847 | || || || || || ||| | ||||| Sbjct 1981380 AATCGCGGTCATATATGATAGCAGAGTT 1981353 >seq1 Length=5074932 Score = 279 bits (308), Expect = 6e-70 Identities = 500/725 (69%), Gaps = 9/725 (1%) Strand=Plus/Plus Query 33117 TCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACA 33176 ||||| ||| || ||| | ||| || || ||||| ||||| ||| | || ||| Sbjct 4719455 TCCCAGTTCGACAAGCAAACGATCAGCCACAAATTCGATATAATCAGACATTAGTTTACA 4719514 Query 33177 ATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATAC 33236 |||||| || || | ||||| || | ||| |||| | |||||||| ||||| | || Sbjct 4719515 ATTCATACCGATTAAATTAACCGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTGTAAC 4719574 Query 33237 CGCATCTGTTATAATAGATCTAACGGTTTCTTCA---CTCGGTGGATGCAATAAATGTTT 33293 || |||| || || || ||| || |||| || ||| || | ||||||| Sbjct 4719575 AGCTTCTGAAATTATT--TC-AACAATTCGTTCATTACTTGGTTTTTGTATCAAATGTTG 4719631 Query 33294 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGA 33353 ||||| ||||||||||| || || || |||||||| |||| |||||||| || || Sbjct 4719632 GAACATTAAACATGCGAAGTCACAATGTAGACCCTCATCTCGTGAGATTAGTTCATTAGA 4719691 Query 33354 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC 33413 ||| || | || ||||||| || || || ||||||||||| || ||||| || || Sbjct 4719692 AAATGTCAAGCCAGGCATTAAACCGCGTTTCTTAAGCCAAAAGATCGAAGCAAAACTGCC 4719751 Query 33414 AGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG-- 33471 | ||||| || ||||| || || ||||| ||||| | | || ||| | ||| Sbjct 4719752 ACTGAAGAAAATGCCTTCAACAGCGGCAAATGCAATTACACGTTCACCAAAGTTGGCCGA 4719811 Query 33472 CTGTCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530 || | | | |||| | |||||||| ||||| ||||| |||||| || || Sbjct 4719812 CTTAGAAGAAATCCAAGCAAGTGCCCAATCAGCCTTACGCTTTACCGCAGGCATTGTCTC 4719871 Query 33531 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33590 || || || || | || ||| ||| || ||| |||| ||| ||||| || || | Sbjct 4719872 AATAGCGTTGAATAAGTAATTTCTTTGTTTCGAATCCTTAATATACGTATCAATTAATAT 4719931 Query 33591 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33650 |||||||||||| ||||| | ||||| || || || |||||||| ||||| || | || Sbjct 4719932 ACTATACATTTCAGAATGCACATTTTCCATAGCAATTTGAAATCCATAGAAGCAACGTGC 4719991 Query 33651 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTC 33710 ||| |||| || |||||| | || ||||| | |||||||||||||| || || || Sbjct 4719992 CTCTGTAACTTGCACTTCTTGGCTGAAGCGTTCAACTAAATTTTCATTCACAATACCATC 4720051 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 33770 | || || || || || || || ||| || |||| | ||| | || || Sbjct 4720052 AGATGCGGCGAAGAAGGCTAACACGTGTGAAATGAAATGTCGTTCATTATCAGTGAGACG 4720111 Query 33771 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 33830 |||||||| ||||||||||| | ||||||||| || |||||||| || ||||| || Sbjct 4720112 TGCCCAATCATCCATATCTTTAGAAAGATCTACTTCCTCAACTGTCCAGAACGATGCTTC 4720171 Query 33831 TGCCT 33835 ||||| Sbjct 4720172 TGCCT 4720176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622665331965680