Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq11 268 2e-66 seq28 168 2e-36 seq1 95.1 3e-14 >seq11 Length=2963766 Score = 268 bits (296), Expect = 2e-66 Identities = 706/1070 (66%), Gaps = 21/1070 (2%) Strand=Plus/Plus Query 363433 AATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCAT 363492 ||||| | |||||||| || || ||||||||||||||||| ||||| || ||||| ||| Sbjct 1981437 AATGGCAAAATTGTTGAGCGACCACAGCATATGTTAATGCGCGTTGCCATCGGTATACAT 1981496 Query 363493 TGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACG 363552 | ||| | ||||| || ||||||||||| || | || | ||| || || Sbjct 1981497 GGTGAAGATATCGATGCAGCAATTGAAACATACAACTTGCTTTCCGAGCGTTATTTTACA 1981556 Query 363553 CACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTT 363612 || || |||| ||| | | | ||||| || | || || |||| || ||||| Sbjct 1981557 CATGCTTCGCCGACACTCTTCGCTGCTGCCACCAAACAGCCGCAATTGTCATCATGCTTC 1981616 Query 363613 CTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGA--ATTGTG 363670 | || | ||| |||||||||||| || ||||| ||| ||| || | | | |||| Sbjct 1981617 TTACTTACCATGGTGGACGATTCCATTGACGGTAT-TTTCACAT-CTGCACATCAATGTG 1981674 Query 363671 CTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATG--TTCGTGCACA 363728 || | ||||| || ||| || || |||||| || || ||| || | || || | Sbjct 1981675 CTTTGATTTCAAAATCTGCTGGTGGTATTGGTCTAA--ATGTACATTGCATACGCGCGAA 1981732 Query 363729 GAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGT 363788 || | ||| |||||| || ||||||||| |||| || ||||| || || Sbjct 1981733 AGGCACTGCGATTGCGGGCACAAATGGCACCTCGAATGGTTTGGTGCCAATGCTGCGAGT 1981792 Query 363789 GTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGC 363848 ||| | ||| || | || || || || ||||| || || || ||| || ||||| Sbjct 1981793 GTTCAATAATGTAGCACGTTATGTGGATCAAGGTGGCGGTAAACGGCCAGGCGCCTTTGC 1981852 Query 363849 TATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACAC 363908 || || || || || ||||| ||||| || || ||| | || | ||||||||| Sbjct 1981853 CATCTACCTGGAACCATGGCATGCTGATATATTCGAATTTTTGGATTTGAAGAAAAACAC 1981912 Query 363909 GGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTT 363968 || ||||| || || || | ||| ||||||| || || ||| | |||| | || Sbjct 1981913 CGGTAAAGAAGAGCACCGCGCCAGAGATTTGTTCTACGCTCTGTGGATACCTGATCTATT 1981972 Query 363969 TATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGG 364028 ||||| || || || || | | | ||||| || | ||||||||| ||||||| || Sbjct 1981973 TATGAGACGTGTCGAAGCCAATGAAGACTGGTCGCTAATGTGCCCACACAAATGTCCTGG 1982032 Query 364029 TCTTTCCGATGTATGGGGTGACGACTATG-----TTGCTCTATACGAAAAGTATGAATCG 364083 | | || || |||||||| || | || ||| ||| |||| |||||| | Sbjct 1982033 TTTACATGAAGTGTGGGGTGAGGAGTTTGAAAAATTG---TATCTGAAA--TATGAACAG 1982087 Query 364084 GAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCG 364143 || ||| ||| ||||| | ||||| | || ||||||||||| || || ||| Sbjct 1982088 GAAGGACGTGCTAATAAGAAGGTAAAAGCACAAAGTCTTTGGTTTGCCATTATTGAATCG 1982147 Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 || | ||||| || ||||| || ||||| || |||||| | || || || ||| || Sbjct 1982148 CAAGTAGAGACTGGCACACCGTACATGTTATATAAAGATGCTTGTAATCGAAAGAGTAAT 1982207 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||| | |||| |||||| || || || |||||||||| ||| | ||||| | Sbjct 1982208 CAGCAGAATGTTGGCACAATTAAGTGTAGTAATTTATGTACCGAAATTGTGGAATATTCG 1982267 Query 364264 GCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAA 364323 || ||||| ||| || || |||||| | || |||||||| | |||||| | | Sbjct 1982268 GCACCCGATGAGGTAGCTGTGTGTAACTTAGCTTCGATCGCATTGAACATGTTTGTCACA 1982327 Query 364324 ---GATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAAT 364380 || || | |||| ||| || | || || ||| | | ||| | ||| Sbjct 1982328 CCCGAGAAAACGTATGACTTTAAGCGCCTCAAAGAGGTCACCAAGACCGTTACACGTAAT 1982387 Query 364381 CTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATG 364440 | | || | || |||| ||| |||||||||| || || || || || ||| | Sbjct 1982388 TTGAATAAAATCATAGACATTAATCATTATCCAATACCGGAGGCAAAGAAATCGAATTTC 1982447 Query 364441 CGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTAT 364490 | ||||| || || ||| |||| ||||| || | || |||| ||| || Sbjct 1982448 AGACATCGTCCCATCGGTATTGGCGTACAAGGTTTTGCCGACGCTTTAAT 1982497 >seq28 Length=1372515 Score = 168 bits (186), Expect = 2e-36 Identities = 424/638 (66%), Gaps = 10/638 (2%) Strand=Plus/Minus Query 111290 AATGCGTTTTAATCTGTCAACTCATTTTCCACTTCTCACAACAAAGCGAACATATTGGAA 111349 |||||| || |||| || | ||||||| | | || ||||||||| || ||| Sbjct 390492 AATGCGCTTCGATCTCCGAAATAGTTTTCCATTATTAACTACAAAGCGAGTATTCTGGCG 390433 Query 111350 GGGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGC 111409 | | | |||||| | ||||||||| ||| || ||| | || || |||| Sbjct 390432 TGCGGTCGCTGAAGAATTGCTGTGGTTTGTTCATGGTCAAACAGACGCTAAAATACTTCA 390373 Query 111410 AGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGG 111469 || ||||||| | | || ||||||||||| | ||||| || |||| | ||| Sbjct 390372 AGAAAAAAATATTCACATATGGGATGGAAACAGTAATCGTGAGTTCTTAGACAAATGTGG 390313 Query 111470 TCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTT 111529 || ||||| |||||||||||||| || |||||||| || ||||| ||||| || || Sbjct 390312 GTTTTCCGACAGAGAAGAAGGTGATCTAGGCCCAGTTTATGGTTTTCAGTGGCGTCATTT 390253 Query 111530 TGGTGCAGACTACAAAACCATGC-ACGACTCATATGATTCACAGGGAACTGATCAATTAC 111588 ||| || | |||| || ||| | ||| | || | |||| | |||||| | | Sbjct 390252 TGGGGCCAAGTACAGAA-ATTGCAAGGACACTTACAAAGATGAGGGTATAGATCAACTTC 390194 Query 111589 AGAATGTCATTGATCAAATTAAG-AACAACCCAACTTCTCGTCGCATTATTATGAGTGCA 111647 || | || ||||| || | | || ||||| |||| | ||| || ||||| ||| ||| Sbjct 390193 AGCAAGTAATTGA-CACAGTCAGAAACAATCCAAATGATCGACGTATTATAATGTCTGCT 390135 Query 111648 TGGAACCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCAT---CTTATGTGCCAG 111704 ||||| ||| | | ||||||| || ||||| |||||| |||| || Sbjct 390134 TGGAATCCAGTCGATATTCCTCAAATGGCTCTACCACCTTGTCATTGCCTTA---CACAA 390078 Query 111705 TTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGT 111764 |||| ||| | | || | | || || ||| | || || || |||||| || || Sbjct 390077 TTTTTTGTTGCCAATGGAGAGTTATCTTGTCAATTATACCAACGCAGTGCTGACATGGGA 390018 Query 111765 CTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTT 111824 | ||||| || ||||||||||| ||||| ||||||| | | | || |||||| || Sbjct 390017 TTGGGTGTACCATTTAATATTGCCTCGTACGCTTTACTTACCTACATGATTGCTCATATT 389958 Query 111825 ACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAAC 111884 || ||||| || || || ||| | ||| | | || ||||| ||||| || | || Sbjct 389957 ACTGATCTCCGGCCAGGGGATTTCGTCCACACTTTGGGTGATGCACATGTCTATAATAAT 389898 Query 111885 CACATTGATGCACTTAAAACACAGTTGAAGCGCAAACC 111922 || ||||| || || | | |||||| | || ||||| Sbjct 389897 CATATTGAAGCGCTAACAGAACAGTTAACACGAAAACC 389860 >seq1 Length=5074932 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/143 (76%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCA-TTTTG-TG 22546 |||||| | ||||||||||| | ||||||||||||||||| ||| || ||||| | Sbjct 4719796 GAACGTGTAATTGCATTTGCCGCTGTTGAAGGCATTTTCTTCAGTGG--CAGTTTTGCTT 4719739 Query 22547 CAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAA 22606 | ||||||||||| || ||||| | | ||||| || | || ||||| ||||| ||| Sbjct 4719738 CGATCTTTTGGCTTAAGAAACGCGGTTTAATGCCTGGCTTGACATTTTCTAATGAACTAA 4719679 Query 22607 TTAGCCGAGATGAGGGTCTTCAT 22629 | |||||||||||||| ||| Sbjct 4719678 TCTCACGAGATGAGGGTCTACAT 4719656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302749121706836