Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq11 98.7 9e-16 seq15 93.3 4e-14 seq4 91.5 1e-13 >seq11 Length=2963766 Score = 98.7 bits (108), Expect = 9e-16 Identities = 325/501 (65%), Gaps = 11/501 (2%) Strand=Plus/Minus Query 132200 TGTTGATTTACTATTTGATATTCACCCGATAAGACTCTTCGTACGTACAAATTACTAGTA 132259 || |||||||| | |||| |||||||||| | || | ||| || | ||| ||| Sbjct 1982878 TGATGATTTACAACTTGAAATTCACCCGAAAGCACACGGCGTGTATAGATATTGGAAGTG 1982819 Query 132260 AACGGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGTAG 132319 | || || || || || ||||| |||| ||||| ||||| | || || |||||| Sbjct 1982818 TATGGTTCAAATGACTCATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGC 1982759 Query 132320 GCAATCAATAATGAATTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGCTCGTCCCAG 132379 |||| || || || || || | || ||| |||| | || | ||| ||| Sbjct 1982758 GCAAGCAGCAAAGAGTTACGAACGCCATGTTGCTTAATTTTCTCCTTCAATTCGGTCCAA 1982699 Query 132380 TTCCACAGATCATTCGATTGAGAGATATTCCACAAATCAAACTGTAAATGACCGCTACTT 132439 ||||| |||||| | | | | ||| ||||| ||| |||||| | ||| |||| Sbjct 1982698 TTCCAAAGATCACTTGGT---GTCTTATCCCACATGTCATACTGTAGAATACCCTTACTA 1982642 Query 132440 GCAGGAGATCCGTTATAAGAATCGTATGCTCCGTGTAATTTGGCAAGTTCTATGCTCTGA 132499 | || || || ||| | || || | || | | || ||| | ||| || || Sbjct 1982641 ACGGGTGAACCTACATATGTTTCATAAGTGCCATATTTTTCGGCTAATTCGCAACTG-GA 1982583 Query 132500 CTC-AGGGCACCATAATAAATAGTCTCTGAGATTTTTCTATTCAATTCCCTTGCTTGTTG 132558 || || |||||||| |||||||| || | |||| | ||| || ||||| | Sbjct 1982582 TTCCAGCGCACCATAGTAAATAGTTTCGAATATTTGTTGATTTAAGCGGAATGCTTCATC 1982523 Query 132559 ACTGTCGTAGGGCAAAT---TTAAAATAGCGAACGCATCGGCAAGTCCCTGAATGCCGAT 132615 ||| ||||| || || ||||||| || || ||||||| || || | ||| || Sbjct 1982522 ACTTTCGTATGGATAACGCATTAAAATT---AAAGCGTCGGCAAAACCTTGTACGCCAAT 1982466 Query 132616 ACCGATGGGTCTATGTTTAAAATTCGATACTTGTGCGCTAGTCAGCGGATAAAAGTTTTT 132675 ||||||||| | |||| | ||||||||| | ||| | | |||||| || | Sbjct 1982465 ACCGATGGGACGATGTCTGAAATTCGATTTCTTTGCCTCCGGTATTGGATAATGATTAAT 1982406 Query 132676 GTCTATTATTTTATTGAGATT 132696 |||||| |||||||| | ||| Sbjct 1982405 GTCTATGATTTTATTCAAATT 1982385 >seq15 Length=2140121 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 23979 TAGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAA 24038 ||| | | || |||||| | || || ||||| |||||||| || | || ||| | || Sbjct 600456 TAGACGAGCAGAATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAG 600397 Query 24039 GTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATA 24098 |||||| | ||||||||||| | |||||| || || |||||||| || || Sbjct 600396 GTCGAGCCTTCTGACACCATCGAAAATGTCAAAGCTAAAATCCAAGACAAAGAGGGTATC 600337 Query 24099 CCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTC 24158 || || || |||||| | |||| | || ||| || ||| | ||||||| | | | | Sbjct 600336 CCCCCAGACCAACAGCGTTTGATCTTCGCCGGAAAACAATTAGAAGATGGTCGCACCTTG 600277 Query 24159 AGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| || ||||||||||| || || ||| | || || || Sbjct 600276 TCCGACTACAACATTCAAAAGGAGTCAACACTCCACTTGGT 600236 >seq4 Length=3596895 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || ||| | || || ||| | ||||| | ||||| ||| ||| | Sbjct 3261295 ATGCAAATTTTCGTGAAGACACTCACCGGCAAAACTATTACTTTGGAAGTTGAG-CCATC 3261353 Query 24051 G-ACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 | |||| || ||| | || || |||||| || || || ||||| || || ||||| Sbjct 3261354 GGACACAATTGAGAATGTAAAGGCTAAGATTCAAGATAAGGAGGGCATTCCACCAGATCA 3261413 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | ||||| | || ||| ||||||||||| |||| ||| | ||| || || Sbjct 3261414 ACAACGTCTGATCTTCGCCGGTAAGCAACTCGAGGATGGACGAACTTTGTCCGACTACAA 3261473 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 || || || ||||| ||| | ||||| ||| || Sbjct 3261474 TATACAGAAGGAATCGACACTCCATTTGGTGCTA 3261507 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | ||||| ||| | || ||| | ||||| ||| || Sbjct 3260839 ATGCAAATCTTCGTGAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTAGAGCCCTCA 3260898 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | || || ||||| || || |||||||| || || |||||| Sbjct 3260899 GATACCATTGAGAACGTTAAGGCTAAGATCCAAGATAAGGAAGGCATTCCACCAGATCAA 3260958 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | ||||| | || ||| ||||| | ||||| | | | | | |||||||||| Sbjct 3260959 CAACGTCTGATCTTCGCCGGTAAGCAGTTGGAAGACGGTCGCACCCTGTCCGATTATAAC 3261018 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || || ||||| ||||| |||| || || || Sbjct 3261019 ATCCAGAAAGAGTCTACTCTTCACTTGGTATT 3261050 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 |||||||||| | || || || || || ||||| || | || || | || || || | Sbjct 3259165 CAAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACC 3259224 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||| || || || | || ||| |||||| ||||||||||| || || || || Sbjct 3259225 ATCCGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGA 3259284 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 |||||| | | || | | ||| |||||||| ||||| | | | | | |||||| Sbjct 3259285 TCAACAACGTTTAATCTTTGCCGGTAAGCAACTGGAAGACGGACGCACCTTGTCCGATTA 3259344 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| || || || |||||| ||||||| || Sbjct 3259345 CAACATCCAGAAGGAGTCTACACTTCATTTGGT 3259377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429746328090690