Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq11 188 7e-43 seq4 136 4e-27 seq15 134 1e-26 seq138 87.8 2e-12 >seq11 Length=2963766 Score = 188 bits (208), Expect = 7e-43 Identities = 729/1123 (65%), Gaps = 38/1123 (3%) Strand=Plus/Minus Query 145049 AAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGAC 145108 |||| ||||| || || ||||| || || | | |||||| || ||| | || || Sbjct 1982881 AAGTGATGATTTACAACTTGAAATTCACCCGAAAGCACACGGCGTGTATAGATATTGGAA 1982822 Query 145109 GTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATG 145168 ||| | |||||||| ||||| || ||||||| ||||| || || | || || |||||| Sbjct 1982821 GTGTATGGTTCAAATGACTCATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATG 1982762 Query 145169 TACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCC 145228 ||| | || || || || || | ||| || | ||| || | ||||| | | Sbjct 1982761 GGCGCAAGCAGCAAAGAGTTACGAACGCCATGTTGCTTAATTTTCTCCTTCAATTCGGTC 1982702 Query 145229 CAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTG 145288 |||| ||| || | | || || ||||||||||| ||||| | ||| |||| || Sbjct 1982701 CAATTCCAAAGATCACTTGGTGTCTTATCCCACATGTCATACTGTAGAATACCCTTACTA 1982642 Query 145289 GCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCC 145348 |||| ||| | | | ||| |||| | ||| ||| | |||||||| | Sbjct 1982641 ACGGGTGAACCTACATATGTTTCATAAGTGCCATATTTTTCGGCTAATTCGCAACTGGAT 1982582 Query 145349 TCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTG--TTGAGCAGCATCGCTTCAT 145406 ||||| || || | ||||| || ||| ||||| || || ||| | || ||||||| Sbjct 1982581 TCCAGCGCACCATAGTAAATAGTTTCGAATATTTGT-TGATTTAAGCGGAAT-GCTTCAT 1982524 Query 145407 CGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGC 145466 | || ||||| || |||| | | ||||| ||||| | || |||| || | | Sbjct 1982523 CACTTTCGTATGGATAACGCATTAAAATTAAAGCGTCGGCAAAACCTTGTACGCCAATAC 1982464 Query 145467 CGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGT 145526 ||||||| |||||| | | || || | ||| | || ||||| ||||| || Sbjct 1982463 CGATGGGACGATGTCTGAAATTCGATTTCTTTGCCTCCGGTATTGGATAATGATTAATGT 1982404 Query 145527 CGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAA----TGTGCCGCAACTTTTCA 145582 | || ||||||||||| || || || ||| || | | || || ||| | Sbjct 1982403 CTATGATTTTATTCAAATTACGTGTAACGGTCTTGGTGACCTCTTTGAGGC-GCTT---A 1982348 Query 145583 AAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTA 145642 |||||| || |||| || || ||| | || | |||||||| || || ||| Sbjct 1982347 AAGTCATACGTTTTCTCGGGTGTGA-CAAACA--TGTTCAATGCGATCGAAGCTAAGTTA 1982291 Query 145643 CAAACTGCCGTCTCCTCGGCGTCGCTG--TATTGTACGATCTCGGCGCACAAATTGCTAC 145700 || || || ||| |||| || || | |||| || || |||| || ||||| |||| Sbjct 1982290 CACACAGCTACCTCATCGG-GT-GCCGAATATTCCACAATTTCGGTACATAAATTACTAC 1982233 Query 145701 ATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCA 145760 | || || || || | ||| ||||||||||| || | || || || || || || | || Sbjct 1982232 ACTTAATTGTGCCAACATTCTGCTGATTACTCTTTCGATTACAAGCATCTTTATATAACA 1982173 Query 145761 TGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--AAAACGGTGCAAGTC-CTGCG 145817 |||||||| ||||||||| || |||| || | || |||| ||| | || | Sbjct 1982172 TGTACGGTGTGCCAGTCTCTACTTGCGATTCAATAATGGCAAAC---CAAAGACTTTGTG 1982116 Query 145818 CACGCACCTGCTGCTGGTAG--CGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAA 145875 | |||| || | ||| || || || | ||| |||||| || | | ||||| Sbjct 1982115 CTTTTACCTTCT--TATTAGCACGTCCTTCCTGTTCATATTTCAGATACAATTTTTCAAA 1982058 Query 145876 CGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATAC 145935 | | ||| | || | || ||||| |||| || ||||| |||||||| | Sbjct 1982057 CTCCTCACCCCACACTTCATGTAAACCAGGACATTTGTGTGGGCACATTAGCGACCAGTC 1981998 Query 145936 GCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTC 145995 | ||||| | ||| || |||||| | ||| || | |||||| ||||| | ||| || Sbjct 1981997 TTCATTGGCTTCGACACGTCTCATAAATAGATCAGGTATCCACAGAGCGTAGAACAAATC 1981938 Query 145996 GC--GCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAAT-TAAGCACACTATAGAT 146052 | |||| ||| || || ||| ||||| |||||||| || | | | | || Sbjct 1981937 TCTGGCGCGGTGC--TCTTCTTTACCGGTGTTTTTCTTCAAATCCAAAAATTCGA-ATAT 1981881 Query 146053 GTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCACCCTG 146109 || || ||||| ||||| | |||| ||| | ||| ||| ||||| |||||| || Sbjct 1981880 ATCAGCATGCCATGGTTCCAGGTAGATGGCAAAGGCGCCTGGCCGTTTACCGCCACCTTG 1981821 Query 146110 GTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGC 146152 ||||| | |||| | | || || || || |||| ||| ||| Sbjct 1981820 ATCCACATAACGTGCTACATTATTGAACACTCGCAGCATTGGC 1981778 >seq4 Length=3596895 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| ||||| || || |||||||||| || || ||||| ||||| || |||||| | Sbjct 3259623 CCACCACGCAAGCGTAGAACTAAATGTAAAGTGGATTCCTTCTGAATATTATAATCGGAC 3259564 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| | ||| ||||| ||| | || ||||| || || || || ||| Sbjct 3259563 AGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGG 3259504 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTT-GAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| || || ||| ||| |||| || | ||| | |||||||| | ||| | Sbjct 3259503 ATTCCTTCCTTATCT-TGAATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAAC 3259445 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | |||||| || || | |||||| ||||||||||||||| Sbjct 3259444 CTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCATG 3259396 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || ||||| | || |||||||| || |||||||||||| Sbjct 3259396 GCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGA 3259337 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||| || || ||||| || || |||||||||| || || || || || Sbjct 3259336 CAAGGTGCGTCCGTCTTCCAGTTGCTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGG 3259277 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGA 131185 ||||||||||||||| ||| | | |||| | | | || | |||||||| | || | Sbjct 3259276 GATTCCTTCTTTGTC-TTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAA 3259218 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || | || || ||||| || ||||| Sbjct 3259217 CCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 3259169 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| ||||| || || ||||| || | ||| || ||||| ||||||||||| || | Sbjct 3260079 CCACCACGCAAGCGAAGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCTGAC 3260020 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| | ||||| || ||| |||| ||||| || || || || ||| Sbjct 3260019 AGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGTGGG 3259960 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || || || ||| || ||| | | ||| | ||||| | | ||| | Sbjct 3259959 ATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAAGGCTCTACT 3259900 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||| || || || || || ||||| || ||||| Sbjct 3259899 TCCAAAGTAATAGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 3259853 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||||||||| || || || | || || ||||||||||||||||| || | Sbjct 3261293 CCACCACGCAAACGCAATACCAAGTGAAGAGTTGATTCCTTTTGAATGTTGTAGTCTGAC 3261234 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| | ||||| || ||| |||| ||||| || || || || || Sbjct 3261233 AGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGA 3261174 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || |||| | || | || |||| | || | Sbjct 3261173 ATGCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCTATGGTGTCGGATGGTTCAACT 3261114 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | |||||| ||||| || || || |||||||| ||||| Sbjct 3261113 TCCAAGGTGATGGTTTTGCCGGTGAGGGTCTTCACGAAAATTTGCAT 3261067 >seq15 Length=2140121 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||| || || || | || |||||||||||||||||||| ||| | Sbjct 600218 CCACCTCGAAGACGCAGAACCAAGTGGAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAC 600277 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || |||| || || || ||| |||| |||||||| ||||| || ||| Sbjct 600278 AAGGTGCGACCATCTTCTAATTGTTTTCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGG 600337 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| |||||| |||| | || | || || | | ||||| Sbjct 600338 ATACCCTCTTTGTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACC 600397 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| ||||| |||| ||||| |||||||||||||| Sbjct 600398 TCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 600444 >seq138 Length=433312 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 131004 TGAGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC 131063 || |||||| | | ||| || |||||||||| || ||||| || ||||| || || || Sbjct 21759 TGCGCCACCTCTAAGACGAAGGACTAAATGTAACGTAGACTCTTTCTGAATATTATAGTC 21700 Query 131064 GCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGG 131123 || ||||| ||||| | ||| || || || | |||| |||||| || || || Sbjct 21699 AGCCAATGTGCGACCATCCTCCAACTGTTTTCCGGCAAAAATTAGACGCTGTTGATCTGG 21640 Query 131124 AGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTC 131183 || || ||||| || || ||||| ||| | || || | |||||| | | || Sbjct 21639 CGGAATACCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGTTC 21580 Query 131184 GATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || | || | ||| || || || || |||||||||||||| ||||| Sbjct 21579 AACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTTTTTACGAAAATTTGCAT 21529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471799226008320