Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq206 156 3e-33 seq4 127 1e-24 seq15 125 5e-24 seq138 104 2e-17 seq1110 98.7 7e-16 >seq206 Length=307991 Score = 156 bits (172), Expect = 3e-33 Identities = 164/214 (77%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 ||||| || | || || ||||||||||| | ||| |||||||| || |||||||| Sbjct 262845 ATGGGTTCCGTTAATGTGAATCGTAATGTCACCGACATTTTCTACCGTTATAAAATGCCA 262786 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 ||| | || ||||||||||| || || ||||| || |||||||| ||||| || ||| Sbjct 262785 CGCTTGCAAGCTAAGGTCGAGGGCAAAGGTAACGGCATCAAAACCGTTATTGTTAATATG 262726 Query 6282 CCTGAAGTCGCTAAGGCGC--TCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGT 6339 | ||||| || | |||| ||||||| || |||||||||||||| || ||||| || | Sbjct 262725 GCCGAAGTGGC--ACGCGCCATCGGACGTCCGGCCACCTACCCGACCAAGTATTTTGGCT 262668 Query 6340 GCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 ||||| | |||||||| || || ||||| |||| Sbjct 262667 GCGAATTGGGCGCTCAAACACAATTTGACTACAA 262634 >seq4 Length=3596895 Score = 127 bits (140), Expect = 1e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||||||||| || |||||| || || |||||||| ||| Sbjct 3259395 CCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGAC 3259336 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || ||| |||| || | ||| || |||||||| |||| ||||||||||| | |||| Sbjct 3259335 AAGGTGCGTCCGTCTTCCAGTTGCTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGG 3259276 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||| ||| || || ||||| | | |||||| |||||| Sbjct 3259275 ATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACC 3259216 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || || |||||||| |||||||| || ||||| || Sbjct 3259215 TCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 3259166 Score = 127 bits (140), Expect = 1e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | ||| || | || ||||| | |||| ||||| |||||||| ||||| | Sbjct 3259625 TACCACCACGCAAGCGTAGAACTAAATGTAAAGTGGATTCCTTCTGAATATTATAATCGG 3259566 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| | || || || ||||| || || || || | ||||||||||| | || Sbjct 3259565 ACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGG 3259506 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| || || |||||| || ||||||| | |||||| | |||| Sbjct 3259505 GGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAA 3259446 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || || || || ||||| |||||||| ||||| ||||| ||||||||| Sbjct 3259445 CCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCATG 3259396 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | ||||||||| ||||| |||||||| ||||||||||| ||||| || | Sbjct 3261295 TACCACCACGCAAACGCAATACCAAGTGAAGAGTTGATTCCTTTTGAATGTTGTAGTCTG 3261236 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| |||| || ||||| || ||||| || || | ||||||||||| | || Sbjct 3261235 ACAGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGGG 3261176 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| || ||| || || || ||||| | | || || ||||| Sbjct 3261175 GAATGCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCTATGGTGTCGGATGGTTCAA 3261116 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || ||||| || || | ||| |||||||| || ||||| Sbjct 3261115 CTTCCAAGGTGATGGTTTTGCCGGTGAGGGTCTTCACGAAAATTTGCAT 3261067 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | ||| || | || || || || || ||||| || || ||||| || | Sbjct 3259853 TACCACCACGCAAGCGAAGGACTAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGG 3259794 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| |||| |||| || ||||| || ||||| || || || ||||||||||| | | Sbjct 3259793 ACAAGGTACGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGAG 3259734 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || |||||| |||||| || || || | | ||||| | ||||| Sbjct 3259733 GAATACCCTCCTTGTCCTGAATTTTGGCTTTAACGTTTTCAATTGTATCGGAAGGTTCAA 3259674 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | ||||| |||||||||||||| ||||| ||||| || ||||| Sbjct 3259673 CCTCCAGAGTAATTGTTTTACCCGTCAATGTTTTAACGAAGATTTGCAT 3259625 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | ||||||||| ||||| |||||||| ||| || || || || ||||| | Sbjct 3261067 TACCACCACGCAAACGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGG 3261008 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || |||| || || || || ||||| || || || ||||||||||| | | Sbjct 3261007 ACAGGGTGCGACCGTCTTCCAACTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTG 3260948 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| || || || || ||| || |||| | |||||| || | Sbjct 3260947 GAATGCCTTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTA 3260888 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || ||||| || || | ||| |||||||| || ||||| Sbjct 3260887 CTTCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 3260839 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | ||| || | || || || || || ||||| ||||| ||||| || | Sbjct 3260081 TACCACCACGCAAGCGAAGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCTG 3260022 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| |||| || ||||| || ||||| || || | ||||||||||| | | Sbjct 3260021 ACAGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGTG 3259962 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || || || || || ||| || |||| | |||||| | || | Sbjct 3259961 GGATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAAGGCTCTA 3259902 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || ||||||||||| || |||| ||| |||||||| || ||||| Sbjct 3259901 CTTCCAAAGTAATAGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 3259853 Score = 102 bits (112), Expect = 5e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| | ||||||||| || || ||||| || |||||||| || |||||| ||| | Sbjct 3261510 ACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTTCGTCC 3261451 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || | ||| || ||||| || || || ||||||||||| | || | ||| || || Sbjct 3261450 ATCCTCGAGTTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGAATGCCCTCCTT 3261391 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 || ||| || ||| ||||||| | || || |||||||| || ||||| Sbjct 3261390 ATCTTGAATCTTAGCCTTTACATTCTCAATTGTGTCCGATGGCTCAACTTCCAAAGTAAT 3261331 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| || || | || |||||||| || ||||| Sbjct 3261330 AGTTTTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 3261295 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||| ||||| |||||||| ||| || || || || ||||| | Sbjct 3260309 TACCACCACGGAGACGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGG 3260250 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| |||| || || ||||| ||||| || || | ||||||||||| | | Sbjct 3260249 ACAGGGTGCGTCCGTCTTCCAACTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTG 3260190 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || || || || || ||| || |||| | |||||| || | Sbjct 3260189 GAATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTA 3260130 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || ||||| || || | ||| |||||||| || ||||| Sbjct 3260129 CTTCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 3260081 >seq15 Length=2140121 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||| | ||||| ||||| || || || |||||||||||| ||||| || | Sbjct 600216 TACCACCTCGAAGACGCAGAACCAAGTGGAGTGTTGACTCCTTTTGAATGTTGTAGTCGG 600275 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || | || ||||||||||||||||| || || | || ||||| || | || Sbjct 600276 ACAAGGTGCGACCATCTTCTAATTGTTTTCCGGCGAAGATCAAACGCTGTTGGTCTGGGG 600335 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || |||||||| ||||| || ||||| | || || || | || | Sbjct 600336 GGATACCCTCTTTGTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGA 600395 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| || || || ||||| || |||||||| ||||| |||||||| Sbjct 600396 CCTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 600444 >seq138 Length=433312 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||| | ||| | || ||||| | || ||| || |||||||| || |||| | Sbjct 21755 CCACCTCTAAGACGAAGGACTAAATGTAACGTAGACTCTTTCTGAATATTATAGTCAGCC 21696 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || || |||||||||||||| ||||| || |||||||| | || Sbjct 21695 AATGTGCGACCATCCTCCAACTGTTTTCCGGCAAAAATTAGACGCTGTTGATCTGGCGGA 21636 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| || || |||||| ||| |||| | | |||||| | |||||| Sbjct 21635 ATACCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGTTCAACC 21576 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || ||||| | |||||| ||||| || ||||| Sbjct 21575 TCAAGAGTGATGGTCTTGCCCGTAAGGGTTTTTACGAAAATTTGCAT 21529 >seq1110 Length=63143 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 44388 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 44329 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 44328 GGTTATATTTAG 44317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334799433646538