Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq11 471 5e-128 seq1 309 4e-79 >seq11 Length=2963766 Score = 471 bits (522), Expect = 5e-128 Identities = 1253/1888 (66%), Gaps = 46/1888 (2%) Strand=Plus/Minus Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900 ||||||| || ||||| || | | | ||||||||||| || | || ||||| || Sbjct 1983220 TTGTCCACAGTAAATTGTATAGCATTTGCGGCGGGTTTCGTGCGCAAGTAATACATGCCA 1983161 Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960 ||||| ||||| |||| |||||||| || ||| || |||||| ||| | || Sbjct 1983160 GTTTTGAGACCTGCCTTCCAACCGTAAAAGTGTATAGAAGTAAGTTTGCCATAGTTTGGT 1983101 Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020 || || | || || || | || ||||||||||||||||| || || | ||||||||| Sbjct 1983100 TCAGCCACGTGTATGTTGAACGACTGACTTTGATCGATGAAAGCGCCACGATCTGCAGCC 1983041 Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 62079 ||||| || || || | ||| ||||||| |||||| || || |||| || ||| Sbjct 1983040 ATTTTGATTGAGGTTTTCACAGAAATCTCCCAAACAGTTTTGTATAAATCGCGTA-TATG 1982982 Query 62080 TTCTGGAA-GGTTTGTAT--TCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 62136 | ||| | || || || | || || || || | | | ||||| |||| || || Sbjct 1982981 CTGTGGTATGGATTCAATGTTTTGTATCGAGCCGCGACTAGTTATAATATTATTTTTCAT 1982922 Query 62137 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTC-TAAGGAGATGCGGATTAACTACTT 62195 ||||||| ||| || ||| |||| | | | ||| || || |||| || |||| Sbjct 1982921 ATCATCATCCCACAAACCCAACTCAGTTAGATCGCGTAACAAG-TGATGATTTACAACTT 1982863 Query 62196 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 62255 ||||||| || || | || | || || || ||||| || || ||||| | |||| Sbjct 1982862 GAAATTCACCCGAAAGCACACGGCGTGTATAGATATTGGAAGTGTATGGTTCAAATGACT 1982803 Query 62256 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62315 |||| || |||| |||||| || ||||| ||||| ||||| || || | || ||| | Sbjct 1982802 CATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAAGCAGCAAAGAGT 1982743 Query 62316 TTCTAAGACCGTATGTTC--TGATTTTATCTTTTAGA--GGTTCCCAATTCCAAAGATCC 62371 | | || || ||||| | ||||| || || | ||| ||||||||||||||| Sbjct 1982742 TACGAACGCC--ATGTTGCTTAATTTTCTCCTTCAATTCGGT--CCAATTCCAAAGATCA 1982687 Query 62372 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 62431 ||| ||||||||||| ||||| || || |||||| Sbjct 1982686 CTTGGTGTCTTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGGTGAACCTACA 1982627 Query 62432 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62491 ||||| || || | || | || || |||| ||| ||||| | || | ||||| || Sbjct 1982626 TATGTTTCATAAGTGCCATATTTTTCGGCTAATTCGCAACTGGATTCCAGCGCACCATAG 1982567 Query 62492 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAA 62551 ||||| |||||||| || | | ||||| ||||| || || |||||||| Sbjct 1982566 TAAATAGTTTCGAATATTTGTTGATTTAAGCGGAATGCTTCATCACTTTCGTATGGATAA 1982507 Query 62552 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62611 | | ||| || ||||| || || ||||| || ||||||||||| || | |||||| Sbjct 1982506 CGCATTAAAATTAAAGCGTCGGCAAAACCTTGTACGCCAATACCGATGGGACGATGTCTG 1982447 Query 62612 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62671 ||| || | | || || || || ||||||| |||||| ||||| |||||||| | | Sbjct 1982446 AAATTCGATTTCTTTGCCTCCGGTATTGGATAATGATTAATGTCTATGATTTTATTCAAA 1982387 Query 62672 TTTC-TGACAATTACTT--TGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCA 62725 || | || | ||| ||||| || || || ||| ||| | | | | Sbjct 1982386 TTACGTGTAACGGTCTTGGTGACC---TCTTTGAGGCGCTTAAAGTCATACGTTTTCTCG 1982330 Query 62726 TCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 62785 | | ||||||||||||||||| | || || | ||||| || |||||||||| | Sbjct 1982329 GGTGTGACAAACATGTTCAATGCGATCGAAGCTAAGTTACACACAGCTACCTCATCGGGT 1982270 Query 62786 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 62845 ||| ||||| | || || || || | |||||||||||| || || || | ||| || Sbjct 1982269 GCCGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGC 1982210 Query 62846 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 62905 |||||||||||| ||||| ||||| ||||| | ||| | || || ||||| || | Sbjct 1982209 TGATTACTCTTTCGATTACAAGCATCTTTATATAACATGTACGGTGTGCCAGTCTCTACT 1982150 Query 62906 TGAGATTCTATAATCGCTTTCCAGACGAC-TCGAGCCTTTA--TTATAGATTTGTATCTC 62962 || ||||| ||||| || ||| | ||| | | || |||| || | ||| | | || Sbjct 1982149 TGCGATTCAATAATGGCAAACCA-AAGACTTTGTGCTTTTACCTTCT-TATTAGCACGTC 1982092 Query 62963 TTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGT 63022 || || ||| ||| ||||||| ||| ||||| || ||||| || | | | Sbjct 1982091 CTTCCT-GTTCATATTTCAGATACAATTTTTCAAACTCCTCACCCCACACTTCATGTAAA 1982033 Query 63023 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT--CCTTC-ACTCGTTTC 63079 |||||||||| | || ||||| | |||||| ||| |||| |||| || ||| || Sbjct 1982032 CCAGGACATTTGTGTGGGCACATTAGCGACCAGTCT---TCATTGGCTTCGACACGTCTC 1981976 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 ||||| |||||||| ||||| ||||| || | |||||||| | || || || || Sbjct 1981975 ATAAATAGATCAGGTATCCACAGAGCGTAGAACAAATCTCTGGCGCGGTGCTCTTCTTTA 1981916 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || || || || || | ||| | || | | ||||||| |||||| ||||||| ||| Sbjct 1981915 CCGGTGTTTTTCTTCAAATCCAAAAATTCGAATATATCAGCATGCCATGGTTCCAGGTAG 1981856 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 ||||| | | || |||||||| || || ||||| | || | || ||||| Sbjct 1981855 ATGGCAAAGGCGCCTGGCCGTTTACCGCCACCTTGATCCACATAACGTGCTACATTATTG 1981796 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 | |||| || |||||| | | |||||| || || ||||| || || | || | Sbjct 1981795 AACACTCGCAGCATTGGCACCAAACCATTCGAGGTGCCATTTGTGCCCGCAATCGCAGTG 1981736 Query 63320 CCACTGGCACGAAT---AT-TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375 || | || || || || ||| ||| |||||| || || || || ||| || || Sbjct 1981735 CCTTTCGCGCGTATGCAATGTAC--ATT--TAGACCAATACCACCAGCAGATTTTGAAAT 1981680 Query 63376 TAATGCGCATCG-TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 63434 || || ||| | | | | | | | | || || || || ||| |||| |||| ||| Sbjct 1981679 CAAAGCACATTGATGTGCAGATGTGA-AAATACCGTCAATGGAATCGTCCACCATGGTAA 1981621 Query 63435 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 63494 ||| || || |||| ||| | | | || | ||| || | || || |||| Sbjct 1981620 GTAAGAAGCATGATGACAATTGCGGCTGTTTGGTGGCAGCAGCGAAGAGTGTCGGCGAAG 1981561 Query 63495 CGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCC 63554 | || ||||| | || ||||| | ||||| || ||||| |||| || ||||| Sbjct 1981560 CATGTGTAAAATAACGCTCGGAAAGCAAGTTGTATGTTTCAATTGCTGCATCGATATCTT 1981501 Query 63555 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 63614 ||| || || | || || ||||||||||| ||||| |||| ||||| || ||| Sbjct 1981500 CACCATGTATACCGATGGCAACGCGCATTAACATATGCTGTGGTCGCTCAACAATTTTGC 1981441 Query 63615 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 63674 || | || | ||| ||||| ||| | ||||||||||||||||| ||||| || Sbjct 1981440 CATTCAACTTGAGCAAATAGGAACGTTCAAGCGTTTTAAAACCAAAATAATTGTAACCAA 1981381 Query 63675 AGTCTCGTTCGTAAATAATAACCGAGTT 63702 | || || || || || ||| | ||||| Sbjct 1981380 AATCGCGGTCATATATGATAGCAGAGTT 1981353 >seq1 Length=5074932 Score = 309 bits (342), Expect = 4e-79 Identities = 503/722 (70%), Gaps = 3/722 (0%) Strand=Plus/Plus Query 32474 TCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACA 32533 ||||| ||| || ||| | ||| || |||||||| ||||| ||| | || ||| Sbjct 4719455 TCCCAGTTCGACAAGCAAACGATCAGCCACAAATTCGATATAATCAGACATTAGTTTACA 4719514 Query 32534 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 32593 |||||| || || | ||||| || | ||| |||| | |||||||| ||||| | || Sbjct 4719515 ATTCATACCGATTAAATTAACCGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTGTAAC 4719574 Query 32594 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAA 32653 || |||| || || | | ||| | ||| ||| | | ||||||| || Sbjct 4719575 AGCTTCTGAAATTATTTCAACAATTCGTTCATTACTTGGTTTTTGTATCAAATGTTGGAA 4719634 Query 32654 CATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAA 32713 ||| ||||||||||| || || ||||||||||| |||| |||| ||| || ||||| Sbjct 4719635 CATTAAACATGCGAAGTCACAATGTAGACCCTCATCTCGTGAGATTAGTTCATTAGAAAA 4719694 Query 32714 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGA 32773 || | || ||||||| || || || ||||||||||| || || ||||| ||| Sbjct 4719695 TGTCAAGCCAGGCATTAAACCGCGTTTCTTAAGCCAAAAGATCGAAGCAAAACTGCCACT 4719754 Query 32774 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTG 32831 |||||||| ||||| || || ||||| ||||| | | || ||| | ||| || Sbjct 4719755 GAAGAAAATGCCTTCAACAGCGGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTT 4719814 Query 32832 TCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 32890 | | | |||| | |||||||| ||||| ||||| |||||||||||| || Sbjct 4719815 AGAAGAAATCCAAGCAAGTGCCCAATCAGCCTTACGCTTTACCGCAGGCATTGTCTCAAT 4719874 Query 32891 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 32950 ||| || || | || ||| ||| || ||| |||| ||| |||||||| || | ||| Sbjct 4719875 AGCGTTGAATAAGTAATTTCTTTGTTTCGAATCCTTAATATACGTATCAATTAATATACT 4719934 Query 32951 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTC 33010 ||||||||| ||||| | ||||| || || ||||||||||| |||||||| | ||||| Sbjct 4719935 ATACATTTCAGAATGCACATTTTCCATAGCAATTTGAAATCCATAGAAGCAACGTGCCTC 4719994 Query 33011 GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 33070 |||| || |||||| | || ||||| |||||||||||||||| || || ||| Sbjct 4719995 TGTAACTTGCACTTCTTGGCTGAAGCGTTCAACTAAATTTTCATTCACAATACCATCAGA 4720054 Query 33071 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 33130 || || || || || || || ||| || |||| | ||| | || || Sbjct 4720055 TGCGGCGAAGAAGGCTAACACGTGTGAAATGAAATGTCGTTCATTATCAGTGAGACGTGC 4720114 Query 33131 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33190 |||||||| ||||||||||| | ||| ||||| || |||||||| || ||||| ||||| Sbjct 4720115 CCAATCATCCATATCTTTAGAAAGATCTACTTCCTCAACTGTCCAGAACGATGCTTCTGC 4720174 Query 33191 CT 33192 || Sbjct 4720175 CT 4720176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633345297360800