Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq15 132 4e-26 seq138 129 5e-25 seq4 102 7e-17 >seq15 Length=2140121 Score = 132 bits (146), Expect = 4e-26 Identities = 161/217 (74%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || || || || ||||| ||||||| | || || ||| | || Sbjct 600445 AATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCTTC 600386 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||||| ||||| |||| |||| |||| || |||||||| || || || || | Sbjct 600385 TGACACCATCGAAAATGTCA---AAGCTAAAATCCAA-GACAAAGAGGGTATCCCCCCAG 600330 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 |||||||||| | || || ||||| |||||||||||||||| |||||| || ||| | Sbjct 600329 ACCAACAGCGTTTGATCTTCGCCGGAAAACAATTAGAAGATGGTCGCACCTTGTCCGACT 600270 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| |||||||| || || || || || || || || Sbjct 600269 ACAACATTCAAAAGGAGTCAACACTCCACTTGGTTCT 600233 >seq138 Length=433312 Score = 129 bits (142), Expect = 5e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 24997 CAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGT 25056 |||||||||| || ||||| || | || || || ||||||| | || || || | | Sbjct 21527 CAATGCAAATTTTCGTAAAAACCCTTACGGGCAAGACCATCACTCTTGAGGTTGAACCTT 21586 Query 25057 CTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 | || ||||| || | ||| | |||| ||| || || ||||| ||||| || || Sbjct 21587 CGGATACTATTGAACATGTTAAGGCCAAAATTCAA-GATAAGGAAGGTATTCCGCCAGAT 21645 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | ||||||||||| ||||| || || |||| |||||| ||| || || Sbjct 21646 CAACAGCGTCTAATTTTTGCCGGAAAACAGTTGGAGGATGGTCGCACATTGGCTGACTAT 21705 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| ||||| || ||| |||||||||| || | || ||||| || Sbjct 21706 AATATTCAGAAAGAGTCTACGTTACATTTAGTCCTTCGTCTTAGAGGTGG 21755 >seq4 Length=3596895 Score = 102 bits (112), Expect = 7e-17 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| ||||| || || ||||||| | || || || | || Sbjct 3259168 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCATC 3259227 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| || | || |||| || | ||| ||||||||||| || || || || Sbjct 3259228 CGATACTATTGAA--AATGTTAAAGCTAAGATTCAA-GACAAAGAAGGAATCCCCCCAGA 3259284 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | || |||||||| || ||| | ||||| | ||||| || |||||| Sbjct 3259285 TCAACAACGTTTAATCTTTGCCGGTAAGCAACTGGAAGACGGACGCACCTTGTCCGATTA 3259344 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || || || || ||||| || || Sbjct 3259345 CAACATCCAGAAGGAGTCTACACTTCATTTGGTTCT 3259380 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || ||| ||||||| | ||||| ||| | || Sbjct 3260081 ATGCAAATCTTCGTGAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTAGAGCCCTCA 3260140 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| | ||| || ||| || || || || |||||||| || ||| Sbjct 3260141 GATACCATTGAGAACGTTAAGGCTAAGATCCAAGATAAGGAGGGAATTCCACCAGATCAA 3260200 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || ||||||||||| || ||||| | ||||| || |||||| || Sbjct 3260201 CAACGTTTGATCTTCGCCGGCAAACAGTTGGAAGACGGACGCACCCTGTCCGATTATAAC 3260260 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 || || ||||| || || || || || || Sbjct 3260261 ATCCAGAAAGAGTCTACTCTTCACTTGGT 3260289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433136831665370