Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1 324 2e-83 seq1684 131 2e-25 seq681 131 2e-25 >seq1 Length=5074932 Score = 324 bits (358), Expect = 2e-83 Identities = 491/699 (70%), Gaps = 0/699 (0%) Strand=Plus/Plus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 |||||| |||||||| || || | |||||| | | ||||||||| || | | | || Sbjct 4719476 ATCAGCCACAAATTCGATATAATCAGACATTAGTTTACAATTCATACCGATTAAATTAAC 4719535 Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045 || | |||||| || ||||| |||| ||| ||| ||| |||||| | ||||| | Sbjct 4719536 CGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTGTAACAGCTTCTGAAATTATTTCAAC 4719595 Query 93046 TACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGT 93105 | || ||| ||||||||||| | || | | ||||||| || || ||||| Sbjct 4719596 AATTCGTTCATTACTTGGTTTTTGTATCAAATGTTGGAACATTAAACATGCGAAGTCACA 4719655 Query 93106 ATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCC 93165 ||||| ||| || |||||||| || | ||||| ||||| || || || | | || Sbjct 4719656 ATGTAGACCCTCATCTCGTGAGATTAGTTCATTAGAAAATGTCAAGCCAGGCATTAAACC 4719715 Query 93166 TCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGC 93225 |||||||| |||||||| || ||||||||||| ||| || || || ||||| || || Sbjct 4719716 GCGTTTCTTAAGCCAAAAGATCGAAGCAAAACTGCCACTGAAGAAAATGCCTTCAACAGC 4719775 Query 93226 TGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGC 93285 |||||||| | | |||||| |||| || || || ||| ||||| | || Sbjct 4719776 GGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTAGAAGAAATCCAAGCAAGTGC 4719835 Query 93286 CCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCG 93345 |||||| || || ||| | ||| | ||| || |||||||| |||| ||||| || Sbjct 4719836 CCAATCAGCCTTACGCTTTACCGCAGGCATTGTCTCAATAGCGTTGAATAAGTAATTTCT 4719895 Query 93346 CTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATT 93405 | | |||||| || || ||||| ||||| | | ||||||||||||||| ||||| Sbjct 4719896 TTGTTTCGAATCCTTAATATACGTATCAATTAATATACTATACATTTCAGAATGCACATT 4719955 Query 93406 CTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGA 93465 ||||| |||||||| ||||| ||||| || | || || || | ||||||||||| Sbjct 4719956 TTCCATAGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTAACTTGCACTTCTTGGCT 4720015 Query 93466 AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATAT 93525 || | || || | ||||||||| || |||||||| ||||| || || || || || | Sbjct 4720016 GAAGCGTTCAACTAAATTTTCATTCACAATACCATCAGATGCGGCGAAGAAGGCTAACAC 4720075 Query 93526 ATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGA 93585 || || |||||| |||| ||| | || ||||||| | |||||| || Sbjct 4720076 GTGTGAAATGAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCCATATCTTTAGA 4720135 Query 93586 AAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 |||||| ||||| || || ||||| |||||||||||||| Sbjct 4720136 AAGATCTACTTCCTCAACTGTCCAGAACGATGCTTCTGC 4720174 >seq1684 Length=43449 Score = 131 bits (144), Expect = 2e-25 Identities = 84/91 (92%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGG 126319 || |||||||||||||||| |||||||||||||||||||||| |||||||||| ||| Sbjct 30430 TATAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGG 30371 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||||||||||||||||| Sbjct 30370 AGCGTGGGTTCGAACCCCACACCTGACAAAT 30340 Score = 127 bits (140), Expect = 2e-24 Identities = 84/92 (91%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 126261 TTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGG 126318 |||||||||| ||||||||| |||||||||||||||||||||| |||||||||| || Sbjct 29141 TTACAGTCAGATTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGG 29082 Query 126319 GAGCGTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||||||||||||||| ||||||||| Sbjct 29081 GAGCGTGGGTTCGAACCCCACATCTGACAAAT 29050 >seq681 Length=104984 Score = 131 bits (144), Expect = 2e-25 Identities = 97/111 (87%), Gaps = 7/111 (6%) Strand=Plus/Minus Query 126243 CGAATTTTGCGC----TTCTATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGAT 126298 ||| || ||||| |||||| || |||||||||||||||| ||||||||||||||||| Sbjct 92344 CGATTTGTGCGCCATATTCTATATA-AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGAT 92286 Query 126299 TTAAGATCTGGTTCCC--TCGGGAGCGTGGGTTCGAACCCCACACCTGACA 126347 ||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct 92285 TTAAGCTCTGGTTCCCGAGAGGGAGCGTGGGTTCGAACCCCACACCTGACA 92235 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 93727 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 93668 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 93667 GTGGGTTCGAACCCCACACCTGACA 93643 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 93923 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 93864 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||| Sbjct 93863 TGGGTTCGAACCCCACACCTGACAA 93839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556608834409520