Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq4 118 9e-22 seq15 113 4e-20 seq138 105 6e-18 >seq4 Length=3596895 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| | | ||| || || || | || ||||| |||||||||||||| || Sbjct 3261296 ATACCACCACGCAAACGCAATACCAAGTGAAGAGTTGATTCCTTTTGAATGTTGTAGTCT 3261237 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || || || | ||| ||||| ||| |||| | ||| ||||| || || Sbjct 3261236 GACAGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGG 3261177 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| || || ||||| ||| | | ||| | |||||||| | ||| Sbjct 3261176 GGAATGCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCTATGGTGTCGGATGGTTCA 3261117 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||||||||| || || || || ||||| ||||| Sbjct 3261116 ACTTCCAAGGTGATGGTTTTGCCGGTGAGGGTCTTCACGAAAATTTGCAT 3261067 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | ||| ||||| | ||||| || || || |||||||||||| Sbjct 3259398 ATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCG 3259339 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| ||||| ||||| || |||| | ||| ||||| || || Sbjct 3259338 GACAAGGTGCGTCCGTCTTCCAGTTGCTTACCGGCAAAGATTAAACGTTGTTGATCTGGG 3259279 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| |||||| ||| | | ||||| || |||| | ||| Sbjct 3259278 GGGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 3259219 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| |||| || || || || || ||||| Sbjct 3259218 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 3259169 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| | | ||| || || || | ||||| ||||| || ||||| |||||| Sbjct 3261068 ATACCACCACGCAAACGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCG 3261009 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| ||||| | || ||||| ||| |||| ||||| ||||| || || Sbjct 3261008 GACAGGGTGCGACCGTCTTCCAACTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGT 3260949 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| || || ||||| || | | |||| ||| || | || || Sbjct 3260948 GGAATGCCTTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCT 3260889 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | |||||||| || || || || || || || ||||| Sbjct 3260888 ACTTCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 3260839 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| | | | ||||||||||| || ||||| || ||||| || |||||| Sbjct 3259626 ATACCACCACGCAAGCGTAGAACTAAATGTAAAGTGGATTCCTTCTGAATATTATAATCG 3259567 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| || | ||||| |||||| | || | ||| ||||| || || Sbjct 3259566 GACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGG 3259507 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || ||| || ||| | | |||| || |||| | || Sbjct 3259506 GGGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCA 3259447 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || | ||||| || |||| |||||| || |||||||||||| Sbjct 3259446 ACCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCATG 3259396 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || ||||| || || || ||||| ||| || ||| || ||| || Sbjct 3261503 ACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTTCGTCCATCCTCG 3261444 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 ||||| ||||| ||| |||| ||||| ||||| || || |||||||| || || || | Sbjct 3261443 AGTTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGAATGCCCTCCTTATCTTGA 3261384 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| |||| | |||| ||||| | | || || |||| || | |||||| Sbjct 3261383 ATCTTAGCCTTTACATTCTCAATTGTGTCCGATGGCTCAACTTCCAAAGTAATAGTTTTG 3261324 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || || || || ||||| ||||| Sbjct 3261323 CCGGTGAGTGTCTTCACGAAAATTTGCAT 3261295 >seq15 Length=2140121 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || ||| || || | || || || |||||||||||||| ||| Sbjct 600215 ATACCACCTCGAAGACGCAGAACCAAGTGGAGTGTTGACTCCTTTTGAATGTTGTAGTCG 600274 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| |||||| | |||||| || ||| |||| | |||||||||||| || Sbjct 600275 GACAAGGTGCGACCATCTTCTAATTGTTTTCCGGCGAAGATCAAACGCTGTTGGTCTGGG 600334 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || |||||||| || || ||| | | ||| | |||||| | | ||| Sbjct 600335 GGGATACCCTCTTTGTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCG 600394 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || || | ||||| || ||||||||||| Sbjct 600395 ACCTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 600444 >seq138 Length=433312 Score = 105 bits (116), Expect = 6e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 |||||||||| |||||| ||||| ||||| || || || || || ||| ||| || Sbjct 21737 ACTAAATGTAACGTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCCTCC 21678 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 | ||||| || || | || ||||||||||| || || ||||| ||||| || || | Sbjct 21677 AACTGTTTTCCGGCAAAAATTAGACGCTGTTGATCTGGCGGAATACCTTCCTTATCTTGA 21618 Query 114294 ATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 || ||| | ||| | ||||||| || || | | ||| || || | || | || || Sbjct 21617 AT-TTTGGCCTTAACATGTTCAATAGTATCCGAAGGTTCAACCTCAAGAGTGATGGTCTT 21559 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTAA 114389 ||| || || |||||||| ||||| ||||| ||| || Sbjct 21558 GCCCGTAAGGGTTTTTACGAAAATTTGCATTGCTGAA 21522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419949052195176