Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1110 98.7 8e-16 seq4 82.4 6e-11 >seq1110 Length=63143 Score = 98.7 bits (108), Expect = 8e-16 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | |||||| |||||| Sbjct 40857 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTATGGAACC 40798 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 40797 ATAACTGATATAATGAGCCTTTTGCGGTTTC 40767 Score = 98.7 bits (108), Expect = 8e-16 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | |||||| |||||| Sbjct 40857 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTATGGAACC 40798 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 40797 ATAACTGATATAATGAGCCTTTTGCGGTTTC 40767 >seq4 Length=3596895 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33937 TCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAAT 33996 |||||||| |||||||| || | ||| || |||| ||||||||||| ||||| || Sbjct 3259815 TCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCCTCCAATTGCTTACCGGCGAAG 3259756 Query 33997 ATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAA 34056 ||||| || || ||||| || | | ||| |||||| | | |||| |||| | | Sbjct 3259755 ATCAGACGTTGTTGATCTGGAGGAATACCCTCCTTGTCC-TGAATTTTGGCTTTAACGTT 3259697 Query 34057 CTC-ACACTATCAGTAGATTCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCAC 34115 || | |||| | || ||| || | || |||||||| || || | |||||| || Sbjct 3259696 TTCAATTGTATCGGAAGGTTCAACCTCCAGAGTAATTGTTTTACCCGTCAATGTTTTAAC 3259637 Query 34116 AAAGATTTGCAT 34127 ||||||||||| Sbjct 3259636 GAAGATTTGCAT 3259625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396887230710796