Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq4 141 2e-28 seq15 129 1e-24 seq138 120 7e-22 seq38 87.8 4e-12 >seq4 Length=3596895 Score = 141 bits (156), Expect = 2e-28 Identities = 149/195 (76%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| || || ||||| | || ||||||||||| || ||||| || || ||||| Sbjct 3261258 TTCCTTTTGAATGTTGTAGTCTGACAGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAA 3261199 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| ||| |||||| |||||| || ||||| ||||||||||| || ||||| || Sbjct 3261198 GATCAAACGTTGTTGA---TCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCTTTGAC 3261142 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||||| | ||| | ||| ||||| | ||||| || || ||||| || ||||| Sbjct 3261141 ATTTTCTATGGTGTCGGATGGTTCAACTTCCAAGGTGATGGTTTTGCCGGTGAGGGTCTT 3261082 Query 288459 GACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 3261081 CACGAAAATTTGCAT 3261067 Score = 136 bits (150), Expect = 9e-27 Identities = 175/239 (73%), Gaps = 7/239 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||| || | ||||| || || || ||||| || || | Sbjct 3259399 CATG-CCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAAT 3259341 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| | |||||||||||||| | ||| || || || ||||| | ||| |||||| | Sbjct 3259340 CGGACAAGGTGCGTCCGTCTTCCAGTTGCTTACCGGCAAAGATTAAACGTTGTTGA---T 3259284 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| ||||||||||| || || || || ||||| || ||||| |||| |||| | Sbjct 3259283 CTGGGGGGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATG 3259224 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||| || || || ||||| ||||| || |||| ||||| ||||| || |||||| || Sbjct 3259223 GTTCAACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTG 3259165 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | | ||| | |||| || ||||| ||||| ||||| |||| Sbjct 3260307 CCACCACGGAGACGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGAC 3260248 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||||||||||||| || ||||| || |||||||||| ||| |||||| ||| Sbjct 3260247 AGGGTGCGTCCGTCTTCCAACTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGA 3260188 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || ||||| ||||| || || || ||||| || || | ||| | |||||| Sbjct 3260187 ATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACT 3260128 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| || || || || || ||||| ||||| || ||||| Sbjct 3260127 TCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 3260081 Score = 132 bits (146), Expect = 1e-25 Identities = 147/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || |||||||| |||| || |||||||| || || || ||||| || ||||| Sbjct 3259588 TTCCTTCTGAATATTATAATCGGACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAA 3259529 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||| ||| |||||| |||||| |||||||| ||||| || ||||| ||||| || Sbjct 3259528 AATCAAACGTTGTTGA---TCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCTTTGAC 3259472 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || |||| |||| | || || || | ||||| || || || |||| ||| || Sbjct 3259471 ATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTT 3259412 Query 288459 GACGAATATCTGCAT 288473 |||||| |||||||| Sbjct 3259411 GACGAAAATCTGCAT 3259397 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| ||||| |||| || ||||| |||||||| || || || || |||||| Sbjct 3261029 TCTTTCTGGATGTTATAATCGGACAGGGTGCGACCGTCTTCCAACTGCTTACCGGCGAAG 3260970 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||||||| |||||| ||| || ||||| ||||| ||||| || || || ||||| Sbjct 3260969 ATCAGACGTTGTTGATCTGGTGGAATGCCTTCCTTATCTTGGATCTTAGCCTTAACGTTC 3260910 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | |||||||| | ||||| || || || || || ||||| ||| Sbjct 3260909 TCAATGGTATCTGAGGGCTCTACTTCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTCACG 3260850 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 3260849 AAGATTTGCAT 3260839 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || ||||| | || ||||||||||| || ||||| || || ||||| Sbjct 3260044 TTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAA 3259985 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| ||| |||||| ||||||||| || ||||| ||||| || || || ||||| Sbjct 3259984 GATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTT 3259925 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| | |||||||| | || || || || || ||||| ||||| || Sbjct 3259924 CTCAATGGTATCTGAAGGCTCTACTTCCAAAGTAATAGTTTTGCCAGTCAGGGTCTTCAC 3259865 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 3259864 GAAGATTTGCAT 3259853 Score = 118 bits (130), Expect = 2e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||||| | || |||||||| || ||||| || || ||||| Sbjct 3259816 TTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCCTCCAATTGCTTACCGGCGAA 3259757 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||||||| ||||| |||| || || || || || ||||| ||||| ||||| || Sbjct 3259756 GATCAGACGTTGTTG---ATCTGGAGGAATACCCTCCTTGTCCTGAATTTTGGCTTTAAC 3259700 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| || | |||| | ||| || || || || || || || || |||| || || Sbjct 3259699 GTTTTCAATTGTATCGGAAGGTTCAACCTCCAGAGTAATTGTTTTACCCGTCAATGTTTT 3259640 Query 288459 GACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 3259639 AACGAAGATTTGCAT 3259625 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||||| || ||||||||||| || ||||| || || ||||| Sbjct 3260802 TTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAA 3260743 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| ||| |||||| ||| ||||| || ||||| ||||| || || || ||||| Sbjct 3260742 GATCAAACGTTGTTGATCTGGTGGAATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTT 3260683 Query 288402 TTCTATAGAATC 288413 || || | ||| Sbjct 3260682 CTCAATGGTATC 3260671 Score = 91.5 bits (100), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || ||||| ||||||| | || ||||| || || | ||| || || ||||| Sbjct 3261486 TTCCTTCTGTATATTGTAGTCGGACAAAGTTCGTCCATCCTCGAGTTGCTTACCGGCGAA 3261427 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||||||| |||||| ||| || || || ||||| || || || || || || || Sbjct 3261426 GATCAGACGTTGTTGATCTGGTGGAATGCCCTCCTTATCTTGAATCTTAGCCTTTACATT 3261367 Query 288402 TTCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || | || |||| || ||||| | || || || || ||||| || ||||| Sbjct 3261366 CTCAATTGTGTC---CGATGGCTCAACTTCCAAAGTAATAGTTTTGCCGGTGAGTGTCTT 3261310 Query 288459 GACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 3261309 CACGAAAATTTGCAT 3261295 >seq15 Length=2140121 Score = 129 bits (142), Expect = 1e-24 Identities = 153/206 (74%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || || ||||||| | ||||| || ||||||||||||||||| |||||| Sbjct 600254 TCCTTTTGAATGTTGTAGTCGGACAAGGTGCGACCATCTTCTAATTGTTTTCCGGCGAAG 600313 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||||||||| ||| ||||| || ||||| || |||||||| ||||| || Sbjct 600314 ATCAAACGCTGTTG---GTCTGGGGGGATACCCTCTTTGTCTTGGATTTTAGCTTTGACA 600370 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | || | || || || | ||||| ||||| || || | || ||| Sbjct 600371 TTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTG 600430 Query 288460 ACGAATATCTGCATTATGTTATTCTA 288485 ||||| ||||||||| || | |||| Sbjct 600431 ACGAAAATCTGCATTCTGCTCGTCTA 600456 >seq138 Length=433312 Score = 120 bits (132), Expect = 7e-22 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || | ||| || | ||| | ||| ||||| || ||||||||||| || Sbjct 21755 CCACCTCTAAGACGAAGGACTAAATGTAACGTAGACTCTTTCTGAATATTATAGTCAGCC 21696 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 | ||||| || || || || |||||||| || || || ||||||||||| |||| Sbjct 21695 AATGTGCGACCATCCTCCAACTGTTTTCCGGCAAAAATTAGACGCTGTTG---ATCTGGC 21639 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||| ||||| || ||||| || || || | ||| |||| ||| | ||| Sbjct 21638 GGAATACCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGTTCA 21579 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || ||||| ||||| || || || || || ||||| || |||||| Sbjct 21578 ACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTTTTTACGAAAATTTGCATT 21528 >seq38 Length=1220326 Score = 87.8 bits (96), Expect = 4e-12 Identities = 218/324 (67%), Gaps = 18/324 (6%) Strand=Plus/Minus Query 72507 GCAAAGTTGTACGCTTATTGGATCTGTAAA-AATTACCGTGAGTCGTATAACATGTATGT 72565 || ||| |||||| | |||||| ||| | || ||||| || | ||||| |||| || Sbjct 172774 GCTAAGATGTACGGCTTTTGGAT-TGTGATTAACTACCGCGAAGCATATAATATGTTTGC 172716 Query 72566 ATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACA--GAGGCCATCAGTTCGTGACT 72623 || || || | ||||||||||| |||| || | || | | |||||||| Sbjct 172715 CTGTAATGGCATATTGTTCAATCACGAA--TCCCCACGTCGTGGTGAAAATTTCGTGACA 172658 Query 72624 CGTAAAATCACGAAGGTGGTCGCGAATAT-TTTCAATGGTGTCGAAAAATGCA-TGTATC 72681 || ||||| ||| ||| ||||| || ||||| || | || || | | | || Sbjct 172657 CGCAAAATAACGCGTTCGGTAGCGAAAATATTTCA------TCAACAATTGGAATCTTTC 172604 Query 72682 ----TCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCA 72737 | |||||| | || | ||| | |||||||| | || | ||||||||| || || Sbjct 172603 GAATTGGGTAATCTCGACTCGAAACGTGATTGGGGTCACGCAATGGATTACGTGGAGGCT 172544 Query 72738 ATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGGAAAACA 72797 |||||| ||||| ||||| || | || | ||| | ||| ||||| || ||| |||| Sbjct 172543 ATGTGGATGATGTTGCAATTGGAAAAACCTGCTGATTTTGTAATTGCTACCGGGGAAACG 172484 Query 72798 ACGAGCGTTCGTGAGTTCGTGAAA 72821 ||||||||||| || ||| || Sbjct 172483 CACAGCGTTCGTGAATTTGTGGAA 172460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179107291772244