Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29]
36,198 sequences; 471,780,370 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq4 141 2e-28
seq15 129 1e-24
seq138 120 7e-22
seq38 87.8 4e-12
>seq4
Length=3596895
Score = 141 bits (156), Expect = 2e-28
Identities = 149/195 (76%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| ||||| || || ||||| | || ||||||||||| || ||||| || || |||||
Sbjct 3261258 TTCCTTTTGAATGTTGTAGTCTGACAGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAA 3261199
Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
||||| ||| |||||| |||||| || ||||| ||||||||||| || ||||| ||
Sbjct 3261198 GATCAAACGTTGTTGA---TCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCTTTGAC 3261142
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|||||||| | ||| | ||| ||||| | ||||| || || ||||| || |||||
Sbjct 3261141 ATTTTCTATGGTGTCGGATGGTTCAACTTCCAAGGTGATGGTTTTGCCGGTGAGGGTCTT 3261082
Query 288459 GACGAATATCTGCAT 288473
||||| || |||||
Sbjct 3261081 CACGAAAATTTGCAT 3261067
Score = 136 bits (150), Expect = 9e-27
Identities = 175/239 (73%), Gaps = 7/239 (3%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| || || | ||| || | ||||| || || || ||||| || || |
Sbjct 3259399 CATG-CCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAAT 3259341
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
||| | |||||||||||||| | ||| || || || ||||| | ||| |||||| |
Sbjct 3259340 CGGACAAGGTGCGTCCGTCTTCCAGTTGCTTACCGGCAAAGATTAAACGTTGTTGA---T 3259284
Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
||||| ||||||||||| || || || || ||||| || ||||| |||| |||| |
Sbjct 3259283 CTGGGGGGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATG 3259224
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
||| || || || ||||| ||||| || |||| ||||| ||||| || |||||| ||
Sbjct 3259223 GTTCAACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTG 3259165
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | | ||| | |||| || ||||| ||||| ||||| ||||
Sbjct 3260307 CCACCACGGAGACGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGAC 3260248
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| |||||||||||||| || ||||| || |||||||||| ||| |||||| |||
Sbjct 3260247 AGGGTGCGTCCGTCTTCCAACTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGA 3260188
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
||||| || ||||| ||||| || || || ||||| || || | ||| | ||||||
Sbjct 3260187 ATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACT 3260128
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| | ||||| || || || || || ||||| ||||| || |||||
Sbjct 3260127 TCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 3260081
Score = 132 bits (146), Expect = 1e-25
Identities = 147/195 (75%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| || || |||||||| |||| || |||||||| || || || ||||| || |||||
Sbjct 3259588 TTCCTTCTGAATATTATAATCGGACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAA 3259529
Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
|||| ||| |||||| |||||| |||||||| ||||| || ||||| ||||| ||
Sbjct 3259528 AATCAAACGTTGTTGA---TCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCTTTGAC 3259472
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|| || |||| |||| | || || || | ||||| || || || |||| ||| ||
Sbjct 3259471 ATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTT 3259412
Query 288459 GACGAATATCTGCAT 288473
|||||| ||||||||
Sbjct 3259411 GACGAAAATCTGCAT 3259397
Score = 129 bits (142), Expect = 1e-24
Identities = 143/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| ||||| ||||| |||| || ||||| |||||||| || || || || ||||||
Sbjct 3261029 TCTTTCTGGATGTTATAATCGGACAGGGTGCGACCGTCTTCCAACTGCTTACCGGCGAAG 3260970
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|||||||| |||||| ||| || ||||| ||||| ||||| || || || |||||
Sbjct 3260969 ATCAGACGTTGTTGATCTGGTGGAATGCCTTCCTTATCTTGGATCTTAGCCTTAACGTTC 3260910
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||| | |||||||| | ||||| || || || || || ||||| |||
Sbjct 3260909 TCAATGGTATCTGAGGGCTCTACTTCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTCACG 3260850
Query 288463 AATATCTGCAT 288473
|| || |||||
Sbjct 3260849 AAGATTTGCAT 3260839
Score = 122 bits (134), Expect = 2e-22
Identities = 142/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| || || || || ||||| | || ||||||||||| || ||||| || || |||||
Sbjct 3260044 TTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAA 3259985
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
||||| ||| |||||| ||||||||| || ||||| ||||| || || || |||||
Sbjct 3259984 GATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTT 3259925
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| || | ||| | |||||||| | || || || || || ||||| ||||| ||
Sbjct 3259924 CTCAATGGTATCTGAAGGCTCTACTTCCAAAGTAATAGTTTTGCCAGTCAGGGTCTTCAC 3259865
Query 288462 GAATATCTGCAT 288473
||| || |||||
Sbjct 3259864 GAAGATTTGCAT 3259853
Score = 118 bits (130), Expect = 2e-21
Identities = 144/195 (74%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| || ||||| || ||||||| | || |||||||| || ||||| || || |||||
Sbjct 3259816 TTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCCTCCAATTGCTTACCGGCGAA 3259757
Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
||||||||| ||||| |||| || || || || || ||||| ||||| ||||| ||
Sbjct 3259756 GATCAGACGTTGTTG---ATCTGGAGGAATACCCTCCTTGTCCTGAATTTTGGCTTTAAC 3259700
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|||||| || | |||| | ||| || || || || || || || || |||| || ||
Sbjct 3259699 GTTTTCAATTGTATCGGAAGGTTCAACCTCCAGAGTAATTGTTTTACCCGTCAATGTTTT 3259640
Query 288459 GACGAATATCTGCAT 288473
||||| || |||||
Sbjct 3259639 AACGAAGATTTGCAT 3259625
Score = 98.7 bits (108), Expect = 2e-15
Identities = 101/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| || ||||| || ||||||| || ||||||||||| || ||||| || || |||||
Sbjct 3260802 TTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAA 3260743
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
||||| ||| |||||| ||| ||||| || ||||| ||||| || || || |||||
Sbjct 3260742 GATCAAACGTTGTTGATCTGGTGGAATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTT 3260683
Query 288402 TTCTATAGAATC 288413
|| || | |||
Sbjct 3260682 CTCAATGGTATC 3260671
Score = 91.5 bits (100), Expect = 3e-13
Identities = 138/195 (71%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| || || ||||| ||||||| | || ||||| || || | ||| || || |||||
Sbjct 3261486 TTCCTTCTGTATATTGTAGTCGGACAAAGTTCGTCCATCCTCGAGTTGCTTACCGGCGAA 3261427
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
||||||||| |||||| ||| || || || ||||| || || || || || || ||
Sbjct 3261426 GATCAGACGTTGTTGATCTGGTGGAATGCCCTCCTTATCTTGAATCTTAGCCTTTACATT 3261367
Query 288402 TTCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|| || | || |||| || ||||| | || || || || ||||| || |||||
Sbjct 3261366 CTCAATTGTGTC---CGATGGCTCAACTTCCAAAGTAATAGTTTTGCCGGTGAGTGTCTT 3261310
Query 288459 GACGAATATCTGCAT 288473
||||| || |||||
Sbjct 3261309 CACGAAAATTTGCAT 3261295
>seq15
Length=2140121
Score = 129 bits (142), Expect = 1e-24
Identities = 153/206 (74%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| ||||| || || ||||||| | ||||| || ||||||||||||||||| ||||||
Sbjct 600254 TCCTTTTGAATGTTGTAGTCGGACAAGGTGCGACCATCTTCTAATTGTTTTCCGGCGAAG 600313
Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|||| ||||||||| ||| ||||| || ||||| || |||||||| ||||| ||
Sbjct 600314 ATCAAACGCTGTTG---GTCTGGGGGGATACCCTCTTTGTCTTGGATTTTAGCTTTGACA 600370
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
||||| || | || | || || || | ||||| ||||| || || | || |||
Sbjct 600371 TTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTG 600430
Query 288460 ACGAATATCTGCATTATGTTATTCTA 288485
||||| ||||||||| || | ||||
Sbjct 600431 ACGAAAATCTGCATTCTGCTCGTCTA 600456
>seq138
Length=433312
Score = 120 bits (132), Expect = 7e-22
Identities = 166/231 (72%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | || | ||| || | ||| | ||| ||||| || ||||||||||| ||
Sbjct 21755 CCACCTCTAAGACGAAGGACTAAATGTAACGTAGACTCTTTCTGAATATTATAGTCAGCC 21696
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363
| ||||| || || || || |||||||| || || || ||||||||||| ||||
Sbjct 21695 AATGTGCGACCATCCTCCAACTGTTTTCCGGCAAAAATTAGACGCTGTTG---ATCTGGC 21639
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || ||||| ||||| || ||||| || || || | ||| |||| ||| | |||
Sbjct 21638 GGAATACCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGTTCA 21579
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|| || || ||||| ||||| || || || || || ||||| || ||||||
Sbjct 21578 ACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTTTTTACGAAAATTTGCATT 21528
>seq38
Length=1220326
Score = 87.8 bits (96), Expect = 4e-12
Identities = 218/324 (67%), Gaps = 18/324 (6%)
Strand=Plus/Minus
Query 72507 GCAAAGTTGTACGCTTATTGGATCTGTAAA-AATTACCGTGAGTCGTATAACATGTATGT 72565
|| ||| |||||| | |||||| ||| | || ||||| || | ||||| |||| ||
Sbjct 172774 GCTAAGATGTACGGCTTTTGGAT-TGTGATTAACTACCGCGAAGCATATAATATGTTTGC 172716
Query 72566 ATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACA--GAGGCCATCAGTTCGTGACT 72623
|| || || | ||||||||||| |||| || | || | | ||||||||
Sbjct 172715 CTGTAATGGCATATTGTTCAATCACGAA--TCCCCACGTCGTGGTGAAAATTTCGTGACA 172658
Query 72624 CGTAAAATCACGAAGGTGGTCGCGAATAT-TTTCAATGGTGTCGAAAAATGCA-TGTATC 72681
|| ||||| ||| ||| ||||| || ||||| || | || || | | | ||
Sbjct 172657 CGCAAAATAACGCGTTCGGTAGCGAAAATATTTCA------TCAACAATTGGAATCTTTC 172604
Query 72682 ----TCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCA 72737
| |||||| | || | ||| | |||||||| | || | ||||||||| || ||
Sbjct 172603 GAATTGGGTAATCTCGACTCGAAACGTGATTGGGGTCACGCAATGGATTACGTGGAGGCT 172544
Query 72738 ATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGGAAAACA 72797
|||||| ||||| ||||| || | || | ||| | ||| ||||| || ||| ||||
Sbjct 172543 ATGTGGATGATGTTGCAATTGGAAAAACCTGCTGATTTTGTAATTGCTACCGGGGAAACG 172484
Query 72798 ACGAGCGTTCGTGAGTTCGTGAAA 72821
||||||||||| || ||| ||
Sbjct 172483 CACAGCGTTCGTGAATTTGTGGAA 172460
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179107291772244
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |