Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2 104 3e-17 >seq2 Length=4266371 Score = 104 bits (114), Expect = 3e-17 Identities = 244/363 (67%), Gaps = 8/363 (2%) Strand=Plus/Plus Query 171726 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 171785 |||||||||||||||| || | |||||||| | ||||||||| | |||| ||||| Sbjct 1616664 AACCTGTGCCAATACCATCAGCACCGTTCACCAAAACCATTGGTATGATTGGTATATACC 1616723 Query 171786 AGTCTGGTTCAATCGCACGCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCG 171845 | | |||||||||| | ||||||||| | || | | || || ||||| | Sbjct 1616724 ATTGTGGTTCAATCTTTTGACCATCATCAACTTCGTACGTTAACAATGGATCGTCGGCTG 1616783 Query 171846 GATCAAAGATTTTACGAGCATCCTTGGTGAGTTTT--GTGAAGATGTACCT--CGTTTGA 171901 | | || || || | || || || || ||||| || || | || ||| Sbjct 1616784 GGTGGAATATGAGTCGCG--TCAAGGGCGACATTAAGGTGAAAATATAACGAGCGCTTGC 1616841 Query 171902 GACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTG 171961 || |||||| || ||| ||||| || || |||||||| | ||||| | | ||| Sbjct 1616842 -ACA-ATCTTTACCTCCCTGCAGACGTGTACCGAATTGACCGCGTGGTTCTAATAAATTT 1616899 Query 171962 ATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACT 172021 ||||| ||||| |||| ||| | | ||||| ||||| || || || || || | Sbjct 1616900 ATATTATTTGATCCCACGTAATTTTGCGCCAAATTGACTATGGTTGCCTGCAGTGACATC 1616959 Query 172022 TCACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATC 172081 || |||||||||||||| ||| | || || || | | | ||| ||||| || |||| | Sbjct 1616960 TCGCCGTGATGGTAGGCGGACATTTCAGCCACCGAACCAGACAATTGTGCAACTTTCACC 1617019 Query 172082 TCA 172084 ||| Sbjct 1617020 TCA 1617022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597083312429840