Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq9 100 3e-16 seq4 96.9 4e-15 seq115 89.7 6e-13 seq2 87.8 2e-12 seq1263 84.2 2e-11 seq772 84.2 2e-11 seq3235 82.4 8e-11 seq155 82.4 8e-11 >seq9 Length=3022361 Score = 100 bits (110), Expect = 3e-16 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| ||| ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 537538 AAAAATATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 537597 Query 57057 CTCACCACTATACTACCGAGGA 57078 || ||||||||||||||||||| Sbjct 537598 CTGACCACTATACTACCGAGGA 537619 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/108 (81%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 56975 TTAACAACAAAT-TAACGTTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGT 57033 |||| || |||| | || ||| | | ||||| |||| || | | ||| |||||| ||| Sbjct 599392 TTAATAAAAAATATTACTTTT-TATACAATTTACTCCCCGACGGGGAATTGAACCCCGGT 599450 Query 57034 CTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGATTG 57081 |||||||||||||||||| ||||| |||||||||||| ||||||||| Sbjct 599451 CTCCCGCGTGACAGGCGGGGATACTGACCACTATACTATCGAGGATTG 599498 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 629088 CTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 629029 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 629028 TACTACCGAGGA 629017 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 631735 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 631794 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 631795 ATACTATCGAGGA 631807 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1953728 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1953787 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 1953788 TACTATCGAGGAT 1953800 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1961793 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1961852 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 1961853 TACTATCGAGGAT 1961865 >seq4 Length=3596895 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 |||||||| ||||| || | || ||||||||||| ||||| || | ||| || || Sbjct 3261284 AAACGCAATACCAAGTGAAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGGGTGCGT 3261225 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110 |||| || | |||||||| ||||| || | || || || || | || | || ||| Sbjct 3261224 CCGTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGAATGCCTTCC 3261165 Query 42111 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTG 42170 || ||| ||| || ||||| | | | |||||| | ||| || || | ||| Sbjct 3261164 TTATCCTGGATCTTGGCTTTGACATTTTCTATGGTGTCGGATGGTTCAACTTCCAAGGTG 3261105 Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||||||| || || ||||| || || |||||||| Sbjct 3261104 ATGGTTTTGCCGGTGAGGGTCTTCACGAAAATTTGCAT 3261067 >seq115 Length=509334 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 57001 AATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 57060 ||| |||||| || | | ||| |||||| ||||||||||||||||||||| ||||| | Sbjct 6145 AATGTTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGA 6086 Query 57061 CCACTATACTACCGAGGAT 57079 ||||||||||| ||||||| Sbjct 6085 CCACTATACTATCGAGGAT 6067 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 6402 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 6461 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 6462 ATACTATCGAGGA 6474 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 7931 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 7872 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 7871 TACTATCGAGGAT 7859 >seq2 Length=4266371 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 4057258 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 4057317 Query 57067 TACTACCGAGGATTGA 57082 ||||| |||||||||| Sbjct 4057318 TACTATCGAGGATTGA 4057333 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 ||| |||| || | | ||| ||||| ||||||||||||||||||||| ||||| ||| Sbjct 4057012 TTTACTCCCCGACGGGGAATTAAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 4056953 Query 57063 ACTATACTACCGAGGATTGA 57082 ||||||||| |||||||||| Sbjct 4056952 ACTATACTATCGAGGATTGA 4056933 >seq1263 Length=54249 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 50023 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 49964 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 49963 ATACTATCGAGGAT 49950 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 52044 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 51985 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 51984 TACTATCGAGGAT 51972 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 52547 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 52488 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 52487 ATACTATCGAGGA 52475 >seq772 Length=93667 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||| | | |||| || | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 80883 AAAAGTGTACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 80824 Query 57058 TCACCACTATACTACCGAGGATTG 57081 | |||||||||||| |||||| || Sbjct 80823 TGACCACTATACTATCGAGGACTG 80800 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 81945 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 81886 Query 57066 ATACTACCGAGGATTG 57081 |||||| |||||| || Sbjct 81885 ATACTATCGAGGACTG 81870 >seq3235 Length=20401 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3985 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 3926 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 3925 TACTATCGAGGAT 3913 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 4488 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 4429 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 4428 ATACTATCGAGGA 4416 >seq155 Length=391542 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 314255 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 314196 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 314195 ATACTATCGAGGA 314183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542967009788320