Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq11 158 1e-33 seq138 120 3e-22 seq4 118 1e-21 seq15 95.1 1e-14 >seq11 Length=2963766 Score = 158 bits (174), Expect = 1e-33 Identities = 551/849 (65%), Gaps = 22/849 (3%) Strand=Plus/Minus Query 153664 TGCTGCATTTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAAT 153723 ||| || ||||||||| |||||| || |||| ||||| ||||| || ||||| |||| Sbjct 1983228 TGCGGCTTTTGTCCACAGTAAATTGTATAGCATTTGCGGCGGGTTTCGTGCGCAAGTAAT 1983169 Query 153724 ACATGCCGGTTTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGA 153783 ||||||| ||||| | ||| |||||| || | ||| | ||| | | | Sbjct 1983168 ACATGCCAGTTTTGAGACCTGCCTTCCAACCGTAAAAGTGTATAGAAGTAAGTTTGCCAT 1983109 Query 153784 AACTGGGCTGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGAT 153843 | | || | || | | ||| |||||||| || ||||||||||||||||| |||| Sbjct 1983108 AGTTTGGTTCAGCCACGTGTATGTTGAACGACTGACTTTGATCGATGAAAGCGCCACGAT 1983049 Query 153844 CGGCCGCCATGTCAATCAAGTTTTT-ACTGCTCATTTCCCACACAGTTTTGTAGACG--G 153900 | || ||||| | || || |||| || | || ||||| ||||||||||| | | Sbjct 1983048 CTGCAGCCATTTTGATTGAGGTTTTCACAGAA-ATCTCCCAAACAGTTTTGTATAAATCG 1982990 Query 153901 CTTTAATGTCGTCGGGTATGCGATCAATTTTCTGCACACTGCCTCCGGCCGCTATAATGG 153960 | | ||| || |||||| ||||| || || | ||| | | |||||| Sbjct 1982989 CGTATATGCTGT--GGTATGGATTCAATGTTTTGTATCGAGCCGCGACTAGTTATAATAT 1982932 Query 153961 AATTGCGCATGTGGTCGTCGTACAAATTTAGTCGACATAAATCTTCAACCAAGTGCTGGT 154020 ||| ||| | || || ||||| | | || ||| | |||||| || | Sbjct 1982931 TATTTTTCATATCATCATCCCACAAACCCAACTCAGTTAGATCGCGTAACAAGTGATGAT 1982872 Query 154021 TAATTACTTGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCT 154080 | | |||||||| || || | | || ||||| ||| | |||| ||| | || | Sbjct 1982871 TTACAACTTGAAATTCACCCGAAAGCACACGGCGTGTATAGATATTGGAAGTGTATGGTT 1982812 Query 154081 CGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCA 154140 | || || || |||||||| | ||||| ||||| | || || ||||| ||| | || Sbjct 1982811 CAAATGACTCATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAAGCA 1982752 Query 154141 ACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACA 154200 ||||||||| || | || |||| ||| | || || || | ||||||||| | Sbjct 1982751 GCAAAGAGTTACGAACGCCATGTTGCTTAATTTTCTCCTTCAATTCGGTCCAATTCCAAA 1982692 Query 154201 AGTTGGTAGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGT 154260 | | ||| | | ||||||||| || || | || |||| ||| | || || Sbjct 1982691 GATCACTTGGTGTCTTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGG--TGA 1982634 Query 154261 CACTA--TAACTAGAGTACGGCCCGTTCAGTTTT--GCCAAGTCGCAACTGGCTTCTAAC 154316 ||| || | || | || | | |||| || || |||||||||| ||| | | Sbjct 1982633 ACCTACATATGTTTCATAAGTGCCAT--ATTTTTCGGCTAATTCGCAACTGGATTCCAGC 1982576 Query 154317 GCCGCATAGTATACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTTCG 154376 || ||||||| | |||||| ||||||| ||||| |||| ||||||||| Sbjct 1982575 GCACCATAGTAAATAGTTTCGAATATTTGTTGATTTAAGCGGAATGCTTCATCACTTTCG 1982516 Query 154377 TACGGCAATCCCAATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGT 154436 || || | | || || | ||||| ||||| | ||||| | ||| | || | ||| Sbjct 1982515 TATGGATAACGCATTAAAATTAAAGCGTCGGCAAAACCTTGTACGCCAATACCGATGGGA 1982456 Query 154437 CTGTGTTTTAAATTCGA-TTCTTTGGCAGCCTCC---AGAGGATAATAATTGATATCGAT 154492 | ||| | |||||||| |||||| |||||| | ||||||| ||| || || || Sbjct 1982455 CGATGTCTGAAATTCGATTTCTTT----GCCTCCGGTATTGGATAATGATTAATGTCTAT 1982400 Query 154493 AATTTTATT 154501 |||||||| Sbjct 1982399 GATTTTATT 1982391 Score = 154 bits (170), Expect = 1e-32 Identities = 527/812 (65%), Gaps = 21/812 (3%) Strand=Plus/Minus Query 154626 TATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATT- 154684 |||| ||||||||| | || |||||||| || ||| ||||| | || | |||||| Sbjct 1982263 TATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGCTGATTA 1982204 Query 154685 CGATTT-GATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGG 154743 | ||| ||| | || || ||||| || || |||||||| ||||| || || ||||| | Sbjct 1982203 CTCTTTCGAT--TACAAGCATCTTTATATAACATGTACGGTGTGCCAGTCTCTACTTGCG 1982146 Query 154744 TTTCAATAATTGTGCGAAACA--GACTTCGCGCCTCAACTTGACAAGTAAATCGATTTTC 154801 ||||||||| | | || || ||||| | || | || | | || || ||| Sbjct 1982145 ATTCAATAATGG--CAAACCAAAGACTTTGTGCTTTTACCTTCTTATTAGCACGTCCTTC 1982088 Query 154802 GCTCTCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGG 154861 ||||||| |||| |||||||||||| || |||| || ||||| || Sbjct 1982087 CTGTTCATATTTCAGATACAATTTTTCAAACTCCTCACCCCACACTTCATGTAAACCAGG 1982028 Query 154862 ACAGCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAA 154921 ||| || || ||||| | ||||| ||| || || || ||| ||||||| | Sbjct 1982027 ACATTTGTGTGGGCACATTAGCGACCAGTCTTCATTGGCTTCGACACGTCTCATAAATAG 1981968 Query 154922 ATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTT 154981 ||| || | ||||| |||||| |||||||| | || | ||||| || |||| Sbjct 1981967 ATCAGGTATCCACAGAGCGTAGAACAAATCTCTGGCGCGGTGCTCTTCTTTACCGGTGTT 1981908 Query 154982 TCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCAT 155041 | ||| |||| |||||| || |||| || || ||||| || || | || | ||| | Sbjct 1981907 TTTCTTCAAATCCAAAAATTCGAATATATCAGCATGCCATGGTTCCAGGTAGATGGCAAA 1981848 Query 155042 CGCGCCTTTGCGTTT---TCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCG 155098 |||||| ||||| || ||||||||||| | ||| | ||||||| |||| || Sbjct 1981847 GGCGCCTGGCCGTTTACCGCCACCTTGATCCACATAACGTGCTACATTATTGAACACTCG 1981788 Query 155099 CAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCACGTATCGCGCTGC----CGC 155154 || || ||| ||| || | | ||||| || ||||| ||||| ||| ||| Sbjct 1981787 CAGCATTGGCACCAAACCATTCGAGGTGCCATTTGTGCCCGCAATCGCAGTGCCTTTCGC 1981728 Query 155155 GAGCACGCGCTTTATGAACATTAACGCCCAAACCTCCGCCGTATTTAGATATTTGCGCAC 155214 | | | || ||| ||||| | || | ||| || | |||| || || |||| Sbjct 1981727 GCGTATGC----AATGTACATTTAGACCAATACCACCAGCAGATTTTGAAATCAAAGCAC 1981672 Query 155215 AGTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAAC 155274 | | || | | | || || | ||| || || || || | ||||| | Sbjct 1981671 ATTGATGTGCAGATGTGAAAATACCGTCAATGGAATCGTCCACCATGGTAAGTAAGAAGC 1981612 Query 155275 ACGAAGATAATTGAGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAA 155334 | || || ||||| || || | | | || || || | ||| || ||| ||||||| Sbjct 1981611 ATGATGACAATTGCGGCTGTTTGGTGGCAGCAGCGAAGAGTGTCGGCGAAGCATGTGTAA 1981552 Query 155335 ACATTTTG-TTGGCGGTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGT 155393 | || | | || |||||||| ||||| || || || || || || ||| ||| Sbjct 1981551 A-ATAACGCTCGGAAAGCAAGTTGTATGTTTCAATTGCTGCATCGATATCTTCACCATGT 1981493 Query 155394 ATACCGATCGCCACGCGCATCAGCATGTGTTG 155425 |||||||| || |||||||| | ||| || || Sbjct 1981492 ATACCGATGGCAACGCGCATTAACATATGCTG 1981461 >seq138 Length=433312 Score = 120 bits (132), Expect = 3e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| |||| ||| | ||| || ||||| ||||| || || || || | ||||| | || Sbjct 21741 AAGGACTAAATGTAACGTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATC 21682 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || | ||| || |||||| |||| || ||||| || || || ||||| ||||| || || Sbjct 21681 CTCCAACTGTTTTCCGGCAAAAATTAGACGCTGTTGATCTGGCGGAATACCTTCCTTATC 21622 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| ||||| ||| ||| || | ||||| | || || || | ||| | ||| Sbjct 21621 TTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGTTCAACCTCAAGAGTGATGGT 21562 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||| || | ||||||||||||||||||||| Sbjct 21561 CTTGCCCGTAAGGGTTTTTACGAAAATTTGCATT 21528 >seq4 Length=3596895 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||||| || || || || || ||||||||||| | | |||||| |||| Sbjct 3259381 AAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCGTC 3259322 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| || ||||| |||||| | || | || || || || || || ||||||||||| || Sbjct 3259321 TTCCAGTTGCTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTC 3259262 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | | || ||||| ||| || | ||||| | || || || | ||| | || Sbjct 3259261 TTG-AATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGG 3259203 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||||| ||||| || || ||||| ||||||||||| Sbjct 3259202 TCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 3259166 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || ||||| | || |||| ||| | || ||||| || ||||| || ||||| | Sbjct 3259624 ACCACCACGCAAGCGTAGAACTAAATGTAAAGTGGATTCCTTCTGAATATTATAATCGGA 3259565 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || | ||| ||||| || |||| | || || || || || || Sbjct 3259564 CAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGG 3259505 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 |||||||| || ||||| ||||| ||||| ||| ||| | ||||| | || | Sbjct 3259504 GATTCCTTCCTTATCTTGAATTTTA-GCTTTGACATTCTCAATAGTATCGGAAGGCTCAA 3259446 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | ||| | ||| || || ||||||||||| |||||||| ||||| Sbjct 3259445 CCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 3259397 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || ||||| | ||| |||| || | || ||||| || ||||||||||| |||| Sbjct 3260080 ACCACCACGCAAGCGAAGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCTGA 3260021 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| |||| || | ||||| ||||| | || | || || || || || || Sbjct 3260020 CAGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGTGG 3259961 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || ||||| || || ||| || ||| | ||||| | || || Sbjct 3259960 GATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAAGGCTCTAC 3259901 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | ||| | || ||||| |||| || || ||||| |||||||| Sbjct 3259900 TTCCAAAGTAATAGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 3259853 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| |||||||||||||| |||| | |||||| |||| || | ||| Sbjct 3261269 TGAAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGGGTGCGTCCGTCCTCCAATTGC 3261210 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| | || | || || || || || ||||| ||||| || || || | | || Sbjct 3261209 TTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGAATGCCTTCCTTATCCTGGA-TCTT 3261151 Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||| ||| || | || || | || ||||| | || | ||| |||||||| Sbjct 3261150 GGCTTTGACATTTTCTATGGTGTCGGATGGTTCAACTTCCAAGGTGATGGTTTTGCCGGT 3261091 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 | || || |||||||||||||| Sbjct 3261090 GAGGGTCTTCACGAAAATTTGCAT 3261067 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | ||| | |||||||| || || || ||||| || | | || || | || Sbjct 3261506 AGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTTCGTCCATCC 3261447 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||| ||||| | || || || || || || || ||||| || || || ||| Sbjct 3261446 TCGAGTTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGAATGCCCTCCTTATCT 3261387 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||||||| ||| | ||| || | || ||||| | ||| | || Sbjct 3261386 TGAATCTTAGCCTTTACATTCTCAATTGTGTCCGATGGCTCAACTTCCAAAGTAATAGTT 3261327 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | || || |||||||||||||| Sbjct 3261326 TTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 3261295 >seq15 Length=2140121 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || |||||||||||||| || | | |||||| | ||||| | || || ||| Sbjct 600248 GTTGACTCCTTTTGAATGTTGTAGTCGGACAAGGTGCGACCATCTTCTAATTGTTTTCCG 600307 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | ||||| ||||| || || || || ||||| ||||| | |||| ||||| Sbjct 600308 GCGAAGATCAAACGCTGTTGGTCTGGGGGGATACCCTCTTTGTCTTGGA-TTTTAGCTTT 600366 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | || ||| | || || |||| || | |||||| || || || || Sbjct 600367 GACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTGATGGTCTTACCAGTTAAGGT 600426 Query 64426 TTTTACGAAAATTTGCATT 64444 ||| |||||||| |||||| Sbjct 600427 TTTGACGAAAATCTGCATT 600445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499418723219120