Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq15 134 1e-26 seq4 120 3e-22 seq138 98.7 1e-15 >seq15 Length=2140121 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||||| ||| || || | |||||||||||||||||||||||||| | Sbjct 600218 CCACCTCGAAGACGCAGAACCAAGTGGAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAC 600277 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | |||||| |||| |||| | |||||||||||| || || Sbjct 600278 AAGGTGCGACCATCTTCTAATTGTTTTCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGG 600337 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| |||||||| |||||| ||| | | ||| | |||||| | | ||| ||| Sbjct 600338 ATACCCTCTTTGTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACC 600397 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || |||||||| | ||||| || ||||||||||| Sbjct 600398 TCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 600444 >seq4 Length=3596895 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| || | ||||| || | | |||| ||||| || |||||||||||| | Sbjct 3259851 CCACCACGCAAGCGAAGGACTAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAC 3259792 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||| | ||| ||||||| |||| ||||| ||||| || ||||| Sbjct 3259791 AAGGTACGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGAGGA 3259732 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| |||| | ||||| | ||| | || |||| | || || Sbjct 3259731 ATACCCTCCTTGTC-CTGAATTTTGGCTTTAACGTTTTCAATTGTATCGGAAGGTTCAAC 3259673 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | |||||||| |||| ||||| || || || ||||| Sbjct 3259672 CTCCAGAGTAATTGTTTTACCCGTCAATGTTTTAACGAAGATTTGCAT 3259625 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||||||||| || || || | |||| |||||||||||||||||||| | Sbjct 3261293 CCACCACGCAAACGCAATACCAAGTGAAGAGTTGATTCCTTTTGAATGTTGTAGTCTGAC 3261234 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| | ||| ||||||| |||| | ||| ||||| || || || Sbjct 3261233 AGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGA 3261174 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| || || ||| || ||| | | ||| | |||||||| | || || Sbjct 3261173 ATGCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCTATGGTGTCGGATGGTTCAACT 3261114 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || || || || || || ||||| ||||| Sbjct 3261113 TCCAAGGTGATGGTTTTGCCGGTGAGGGTCTTCACGAAAATTTGCAT 3261067 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||| ||||| | | |||||||| || |||||||| ||| Sbjct 3259396 GCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGA 3259337 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||| || ||||| ||||||| | |||||| ||| ||||| || || || Sbjct 3259336 CAAGGTGCGTCCGTCTTCCAGTTGCTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGG 3259277 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| ||| | || | ||||| | ||| | || |||| | || | Sbjct 3259276 GATTCCTTCTTTGTC-TTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAA 3259218 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||||| || || || || || ||||| Sbjct 3259217 CCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 3259169 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| || | ||||||||||| | || ||||| ||||| || || ||| | Sbjct 3259623 CCACCACGCAAGCGTAGAACTAAATGTAAAGTGGATTCCTTCTGAATATTATAATCGGAC 3259564 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| | ||||| || | | || | ||| ||||| || || || Sbjct 3259563 AGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGG 3259504 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| |||| | ||| | | || | || |||| | ||| || Sbjct 3259503 ATTCCTTCCTTATCT-TGAATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAAC 3259445 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | ||||| || |||| |||||| || |||||||||||| Sbjct 3259444 CTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCATG 3259396 >seq138 Length=433312 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| | ||| | |||||||||| | ||||| || ||||| || ||||| Sbjct 21756 GCCACCTCTAAGACGAAGGACTAAATGTAACGTAGACTCTTTCTGAATATTATAGTCAGC 21697 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||| | ||||| |||| | | |||||||||||||| || || || Sbjct 21696 CAATGTGCGACCATCCTCCAACTGTTTTCCGGCAAAAATTAGACGCTGTTGATCTGGCGG 21637 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| || || ||| |||| | |||| ||||| | || || | | || | Sbjct 21636 AATACCTTCCTTATC-TTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGTTCAA 21578 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||| | || | || || || || || |||||||| ||||| ||||| ||| Sbjct 21577 CCTCAAGAGTGATGGTCTTGCCCGTAAGGGTTTTTACGAAAATTTGCATTGCT 21525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496037853670560