Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq15 131 2e-25 seq138 109 5e-19 seq4 104 2e-17 >seq15 Length=2140121 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | || ||||| |||||||| ||||| ||| | Sbjct 600218 CCACCTCGAAGACGCAGAACCAAGTGGAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAC 600277 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| |||| |||||||| ||| ||||||| ||||| || || || || Sbjct 600278 AAGGTGCGACCATCTTCTAATTGTTTTCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGG 600337 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||| ||||| |||||| |||| | ||||| |||||| | | |||||| Sbjct 600338 ATACCCTCTTTGTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACC 600397 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || || || | ||||| || ||||||||||| Sbjct 600398 TCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 600444 >seq138 Length=433312 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 || ||||||| |||||||||||| |||||||| || || ||| |||||| ||| || Sbjct 21737 ACTAAATGTAACGTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCCTCC 21678 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | ||||||||| || | || | ||||| ||||| || || || || ||||| || Sbjct 21677 AACTGTTTTCCGGCAAAAATTAGACGCTGTTGATCTGGCGGAATACCTTCCTTATCTTGA 21618 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 ||||| ||| | ||||| | || |||| | || || || | || | || ||| Sbjct 21617 ATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGTTCAACCTCAAGAGTGATGGTCTTG 21558 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || || || |||||||| ||||| ||||| ||| Sbjct 21557 CCCGTAAGGGTTTTTACGAAAATTTGCATTGCT 21525 >seq4 Length=3596895 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || || || | || ||||||| || || || || |||||||| |||||| | Sbjct 3259623 CCACCACGCAAGCGTAGAACTAAATGTAAAGTGGATTCCTTCTGAATATTATAATCGGAC 3259564 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || | |||||| |||||| | ||||| || || ||||| || || Sbjct 3259563 AGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGG 3259504 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTT-GAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| || ||| ||| |||| || | || | || || | | ||| || Sbjct 3259503 ATTCCTTCCTTATCT-TGAATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAAC 3259445 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||||| || |||| |||||| || |||||||||||| Sbjct 3259444 CTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCATG 3259396 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || || ||||| ||||| || | || || || |||||||| ||||| || | Sbjct 3261293 CCACCACGCAAACGCAATACCAAGTGAAGAGTTGATTCCTTTTGAATGTTGTAGTCTGAC 3261234 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || | || || || ||| ||||||| || || ||||| || || Sbjct 3261233 AGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGA 3261174 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||| ||| ||| || |||| | ||| | |||||| | || ||| Sbjct 3261173 ATGCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCTATGGTGTCGGATGGTTCAACT 3261114 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||||||||| || || || || ||||| ||||| Sbjct 3261113 TCCAAGGTGATGGTTTTGCCGGTGAGGGTCTTCACGAAAATTTGCAT 3261067 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| ||||| || | ||||||||||| || || || |||||| | Sbjct 3260307 CCACCACGGAGACGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGAC 3260248 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || | |||||| || ||| ||||||| || || ||||| || || Sbjct 3260247 AGGGTGCGTCCGTCTTCCAACTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGA 3260188 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||| || ||| || ||| | | || | ||| || | ||| ||| Sbjct 3260187 ATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACT 3260128 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | |||||||| || || || || || || || ||||| Sbjct 3260127 TCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 3260081 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || || ||||| ||||| || | ||||||||||| || || || |||||| | Sbjct 3261065 CCACCACGCAAACGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGAC 3261006 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || | ||| || || ||| |||||| || || ||||| || || Sbjct 3261005 AGGGTGCGACCGTCTTCCAACTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGA 3260946 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||| || ||| || ||| | | || | ||| || | ||| ||| Sbjct 3260945 ATGCCTTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACT 3260886 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | |||||||| || || || || || || || ||||| Sbjct 3260885 TCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 3260839 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 126883 TGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATC 126942 ||| || ||||| | || | ||||||||| | || || || || || |||||||| || Sbjct 3261525 TGCGCCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTC 3261466 Query 126943 GCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGG 127002 | || || || ||| || || || || || ||| |||||| || || ||||| || Sbjct 3261465 GGACAAAGTTCGTCCATCCTCGAGTTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGG 3261406 Query 127003 AGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTC 127062 || ||||||||||| || || || ||| | | || | ||||||| ||| Sbjct 3261405 TGGAATGCCCTCCTTATCTTGAATCTTAGCCTTTACATTCTCAATTGTGTCCGATGGCTC 3261346 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| | || | ||||||||||| || || || || ||||| ||||| Sbjct 3261345 AACTTCCAAAGTAATAGTTTTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 3261295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475285647775520