Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq11 219 4e-52 seq4 118 1e-21 seq15 109 5e-19 seq138 98.7 9e-16 >seq11 Length=2963766 Score = 219 bits (242), Expect = 4e-52 Identities = 934/1459 (64%), Gaps = 44/1459 (3%) Strand=Plus/Plus Query 123237 ATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCA---GGGCGGCAAACGCAAA 123293 ||||||||||| | |||||| | | || | || || || ||||| ||||| | Sbjct 1981782 ATGCTGCGAGTGTTCAATAATGTAGCACGTTATGTGGATCAAGGTGGCGGTAAACGGCCA 1981841 Query 123294 GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTA 123353 ||||| | || ||||| || ||||| ||||| | |||| | | ||| ||||| |||| Sbjct 1981842 GGCGCCTTTGCCATCTACCTGGAACCATGGCATGCTGATATATTCGAATTTTTGGATTTG 1981901 Query 123354 AAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTA 123413 || |||| || ||||| | ||| | |||||||| |||||| | ||| || Sbjct 1981902 AAGAAAAACACCGGTAAAGAAGAGCACCGCGCCAGAGATTTGTTCTACGCTCTGTGGATA 1981961 Query 123414 CCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGAT 123473 || ||| | |||||| |||| || ||| | | | | |||||||| ||||| || | Sbjct 1981962 CCTGATCTATTTATGAGACGTGTCGAAGCCAATGAAGACTGGTCGCTAATGTGCCCACAC 1982021 Query 123474 CGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATAC 123533 ||||| || || || || | || | ||||||| | ||||| | |||| Sbjct 1982022 AAATGTCCTGGTTTACATGAAGTGTGGGGTGAGGAGTTTGAAAAATTGTATCTGAAATAT 1982081 Query 123534 GAGCGCGAAGGCAAACAGGTTAGT---CAGGTTCCGGCAC---GTGATTTGTTCAAATTT 123587 || | ||||| || | || | |||| |||| || || ||| Sbjct 1982082 GAACAGGAAGG---ACGTGCTAATAAGAAGGTAAAAGCACAAAGTCTTTGGTT---TGCC 1982135 Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 ||||| ||| | ||||| || || || || ||||||||| | || ||||| || || || Sbjct 1982136 ATTATTGAATCGCAAGTAGAGACTGGCACACCGTACATGTTATATAAAGATGCTTGTAAT 1982195 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 | || | |||||| || | || ||||| || ||||||||| | || |||||||| Sbjct 1982196 CGAAAGAGTAATCAGCAGAATGTTGGCACAATTAAGTGTAGTAATTTATGTACCGAAATT 1982255 Query 123708 ATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGA-- 123765 | ||||| | ||||| | || || |||||||| || |||||||| ||| Sbjct 1982256 GTGGAATATTCGGCACCCGATGAGGTAGCTGTGTGTAACTTAGCTTCGATCGCATTGAAC 1982315 Query 123766 ATCGTTG------CGTCGAAAACGGCGCTTTTAATTTCCAAACG-CTCAAACGCATAACA 123818 || ||| | ||||||| | | | ||| || || |||||| | || Sbjct 1982316 ATGTTTGTCACACCCGAGAAAACG----TATGACTTT--AAGCGCCTCAAAGAGGTCACC 1982369 Query 123819 AAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAA 123878 || || || | |||||||| ||||| || || ||||| |||||| | ||| Sbjct 1982370 AAGACCGTTACACGTAATTTGAATAAAATCATAGACATTAATCATTATCCAATACCGGAG 1982429 Query 123879 GCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGAC 123938 || || ||||| | ||| | || |||| | ||| | ||||| || |||||| Sbjct 1982430 GCAAAGAAATCGAATTTCAGACATCGTCCCATCGGTATTGGCGTACAAGGTTTTGCCGAC 1982489 Query 123939 GCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTT--GCTT-AATACG 123995 || || | | |||| || |||||||| || |||||| || |||| ||| Sbjct 1982490 GCTTTAATTTTAATGCGTTATCCATACGAAAGTGATGAAGCA---TTCCGCTTAAATCAA 1982546 Query 123996 CAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTG-CGAAAAT 124054 |||||| |||||| ||||| || || || |||| | || |||||| | | |||||| Sbjct 1982547 CAAATATTCGAAACTATTTACTATGGTGCGCTGGAATCCAGTTGCGAATTAGCCGAAAAA 1982606 Query 124055 TCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGA 124114 | | ||| | || |||| || | || || | || |||||| | ||||| || Sbjct 1982607 T-ATGGCACTTATGAAACATATGTAGGTTCACCCGTTAGTAAGGGTATTCTACAGTATGA 1982665 Query 124115 CATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATC 124174 ||||||| || ||||| | || | ||| | |||| || || || | || Sbjct 1982666 CATGTGGGATAAGACACCAAGTGATCTTTGGAATTGGACCGAATTGAAGGAGAAAATTAA 1982725 Query 124175 GACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCA 124234 | || || | |||||||| || || | ||| |||||| || || | || || || Sbjct 1982726 GCAACATGGCGTTCGTAACTCTTTGCTGCTTGCGCCCATGCCAACTGCTTCAACAGCACA 1982785 Query 124235 AATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGT 124294 |||| | || ||||| || || || || || | |||| |||| | || || || || Sbjct 1982786 AATTATGGGCAACAATGAGTCATTTGAACCATACACTTCCAATATCTATACACGCCGTGT 1982845 Query 124295 GTTAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAA 124354 | | | || || |||||||| |||||||||| ||| | ||| | | ||| Sbjct 1982846 GCTTTCGGGTGAATTTCAAGTTGTAAATCATCACTTGTTACGCGATCTAACTGAGTTGGG 1982905 Query 124355 TTTGTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCAT 124414 ||||| ||||| | ||| || | ||||| | | ||| | || ||| Sbjct 1982906 TTTGTGGGATGATGATATGAAAAATAATATTATAACTAGTCGCGGCTCGATACAAAACAT 1982965 Query 124415 CGCTTCGATTCCGGAACACGTCAAGC-AACTGTACAAAACCGTGTGGGAAATGAAAAATA 124473 | || || || | || | | || | | |||||||| || ||||| || | Sbjct 1982966 TGAATCCATACCACAGCATAT-ACGCGATTTATACAAAACTGTTTGGGAGATTTCTGTGA 1983024 Query 124474 AACGATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTA 124533 || | ||| ||||||| | || || ||||| | || ||||||||||| || || | Sbjct 1983025 AAACCTCAATCAAAATGGCTGCAGATCGTGGCGCTTTCATCGATCAAAGTCAGTCGTTCA 1983084 Query 124534 ACGTGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGA 124593 || | || || ||||| | ||| | | | || |||||| | ||| |||| Sbjct 1983085 ACATACACGTGGCTGAACCAAACTATGGCAAACTTACTTCTATACACTTTTACGGTTGGA 1983144 Query 124594 --GCAGCGGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCAT 124651 ||| || |||||||| |||||||||||||| | || ||||| || || |||| || Sbjct 1983145 AGGCA--GGTCTCAAAACTGGCATGTATTACTTGCGCACGAAACCCGCCGCAAATGCTAT 1983202 Query 124652 TCAATTTACCGTCGACAAA 124670 |||||||| || |||||| Sbjct 1983203 ACAATTTACTGTGGACAAA 1983221 >seq4 Length=3596895 Score = 118 bits (130), Expect = 1e-21 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 |||| ||| | || |||||||| || |||||||||||| ||| || | | ||| | Sbjct 3259605 ACTAAATGTAAAGTGGATTCCTTCTGAATATTATAATCG--GACAGTGTGCGTCCATCCT 3259548 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 |||| ||||| || ||| | ||||| ||||| || || || || || ||||| ||||||| Sbjct 3259547 CCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTT 3259488 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||||||| ||||| || | || ||||||| ||| || || | ||| | |||| Sbjct 3259487 GAATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTT 3259428 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || | |||||| || ||||| ||||| Sbjct 3259427 TTCCCGTCAAAGTTTTGACGAAAATCTGCAT 3259397 Score = 116 bits (128), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGTCCAATT 45195 || || |||||||||||||| || || || || |||| | | | || ||||||| Sbjct 3261269 TGAAGAGTTGATTCCTTTTGAATGTTGTAGTC--TGACAGGGTGCGTCCGTCCTCCAATT 3261212 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 | || || ||| | ||||| ||||| || || || ||||||||||| ||||| || || | Sbjct 3261211 GCTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGAATGCCTTCCTTATCCTGGATCT 3261152 Query 45256 TTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 | ||||| ||||| ||||||||| | || ||||| | || | |||||||||| Sbjct 3261151 TGGCTTTGACATTTTCTATGGTGTCGGATGGTTCAACTTCCAAGGTGATGGTTTTGCCGG 3261092 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || ||||||||||| Sbjct 3261091 TGAGGGTCTTCACGAAAATTTGCAT 3261067 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 |||||||| || | | ||| | ||| || || |||||||| || ||||| || ||| Sbjct 3261521 CCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGAC 3261462 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| || | ||| || || ||| | |||| ||||| || || || ||| Sbjct 3261461 AAAGTTCGTCCATCCTCGAGTTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGA 3261402 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || ||||||||||| || || | || | ||||| || | ||| ||| Sbjct 3261401 ATGCCCTCCTTATCTTGAATCTTAGCCTTTACATTCTCAATTGTGTCCGATGGCTCAACT 3261342 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | ||||| ||||||||||| || || || || ||||||||||| Sbjct 3261341 TCCAAAGTAATAGTTTTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 3261295 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| || || ||||||||||| ||||| || || ||| | ||| || ||| Sbjct 3259833 ACTAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCCTCC 3259774 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||| || || ||| | |||| ||||| || || || ||||| || || || || ||| Sbjct 3259773 AATTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGAGGAATACCCTCCTTGTCCTGA 3259714 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||| | ||| | || ||||||| || || || ||||||| ||||| Sbjct 3259713 ATTTTGGCTTTAACGTTTTCAATTGTATCGGAAGGTTCAACCTCCAGAGTAATTGTTTTA 3259654 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||||| || || |||||||| Sbjct 3259653 CCCGTCAATGTTTTAACGAAGATTTGCAT 3259625 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/212 (71%), Gaps = 14/212 (7%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| || || ||||||||||| ||||| || || ||| ||| | |||||| Sbjct 3260550 ACTAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCG--GACA-------AGTCGTCC 3260500 Query 45192 AATT---GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 | | |||| || ||| | ||||| ||||| || || || || | || || |||||| Sbjct 3260499 ATCTCCAGTTTGCCGGCGAAGATCAA-CGTTGTTGATCTGGTGGGAATCCCTCCTTATCT 3260441 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 || || || ||||| | ||||| ||||||||| | || ||||| | || | ||| Sbjct 3260440 TGGATCTTGGCTTTGA-CATTTCTATGGTGTCGGATGGTTCAACTTCCAAGGTGATGGTT 3260382 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || || || |||||||||||||| Sbjct 3260381 TTACCGGTGAGGGTCTTCACAAAAATTTGCAT 3260350 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGAC--GGTTTTAGAATCGT 45189 |||| || || ||||||||||| || || || || | ||||| ||| || | Sbjct 3260061 ACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGT--CTGACAGGGTGCGTCCGTCCT 3260004 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 ||||||| || || ||| | ||||| ||||| || || || || || || || ||||||| Sbjct 3260003 CCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTATCTT 3259944 Query 45250 GAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 | | | || | | | || | || | ||| || |||| ||| ||||| | ||||| ||| Sbjct 3259943 GGA-TCTTAGCCTTAACGTTCTCAATGGTATCTGAAGGCTCTACTTCCAAAGTAATAGTT 3259885 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || || || || |||||||| Sbjct 3259884 TTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 3259853 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || || || ||||| ||||||||| | ||| | || ||||| || Sbjct 3261041 TGAAGAGTAGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGACCGTCTTCCAACTGC 3260982 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | |||| ||||| || || || ||||||||||| |||||||| | | || Sbjct 3260981 TTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGAATGCCTTCCTTATCTTGGA-TCTT 3260923 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 | | | || | || | ||| || || | ||| ||||| | || | |||||||| || Sbjct 3260922 AGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACTTCCAAGGTGATGGTTTTGCCAGT 3260863 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || |||||||| Sbjct 3260862 GAGGGTCTTCACGAAGATTTGCAT 3260839 >seq15 Length=2140121 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||| |||||||| || || || ||| | ||| | ||| || |||||| Sbjct 600242 TGGAGTGTTGACTCCTTTTGAATGTTGTAGTCGGACAAGGTGCGACCATCTTCTAATTGT 600301 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | ||||| || || ||||| || || || || ||||| ||||| ||||| Sbjct 600302 TTTCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGGATACCCTCTTTGTCTTGGATTTTA 600361 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| ||| | |||||| |||| |||||| || | || | || || || ||| Sbjct 600362 GCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTGATGGTCTTACCAGTT 600421 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || ||||| ||||| Sbjct 600422 AAGGTTTTGACGAAAATCTGCAT 600444 >seq138 Length=433312 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| ||| | ||| || || || || |||||||| || | || | ||| ||| Sbjct 21737 ACTAAATGTAACGTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCCTCC 21678 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 || |||||||| || | || | || || || || |||||||| ||||| ||||||||| Sbjct 21677 AACTGTTTTCCGGCAAAAATTAGACGCTGTTGATCTGGCGGAATACCTTCCTTATCTTGA 21618 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| || | ||| | || || |||| || || || ||||| | || ||| Sbjct 21617 ATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGTTCAACCTCAAGAGTGATGGTCTTG 21558 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATCGC 45343 || || || |||||||| ||||||||||| || Sbjct 21557 CCCGTAAGGGTTTTTACGAAAATTTGCATTGC 21526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451798679852080