Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 1e-14 >seq2 Length=4266371 Score = 95.1 bits (104), Expect = 1e-14 Identities = 242/363 (67%), Gaps = 8/363 (2%) Strand=Plus/Plus Query 175746 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 175805 |||||||||||||||| || | |||||||| | ||||||||| | |||| ||||| Sbjct 1616664 AACCTGTGCCAATACCATCAGCACCGTTCACCAAAACCATTGGTATGATTGGTATATACC 1616723 Query 175806 AGTCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865 | | |||||||||| | |||||||| | || | | || || || || | Sbjct 1616724 ATTGTGGTTCAATCTTTTGACCATCATCAACTTCGTACGTTAACAATGGATCGTCGGCTG 1616783 Query 175866 GATCAAAGATTTTACGAGCATCCTTGGTGAGTTTT--GTGAAGATGTACCT--CGTTTGA 175921 | | || || || | || || || || ||||| || || | || ||| Sbjct 1616784 GGTGGAATATGAGTCGCG--TCAAGGGCGACATTAAGGTGAAAATATAACGAGCGCTTGC 1616841 Query 175922 GACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTG 175981 || |||||| || ||| ||||| || || |||||||| | ||| || | | ||| Sbjct 1616842 -ACA-ATCTTTACCTCCCTGCAGACGTGTACCGAATTGACCGCGTGGTTCTAATAAATTT 1616899 Query 175982 ATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACT 176041 ||||| ||||| |||| || | | |||||| ||||| || || || || || | Sbjct 1616900 ATATTATTTGATCCCACGTAATTTTGCGCCAAATTGACTATGGTTGCCTGCAGTGACATC 1616959 Query 176042 TCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATC 176101 || |||||||||||||| ||| | || ||||| | | | ||| || || || |||| | Sbjct 1616960 TCGCCGTGATGGTAGGCGGACATTTCAGCCACCGAACCAGACAATTGTGCAACTTTCACC 1617019 Query 176102 TCA 176104 ||| Sbjct 1617020 TCA 1617022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613229603329680