Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq15 123 6e-23 seq4 120 7e-22 seq138 98.7 2e-15 >seq15 Length=2140121 Score = 123 bits (136), Expect = 6e-23 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | ||| || | |||||| || ||||||||||| | ||||||||| | ||| || Sbjct 600223 TCGAAGACGCAGAACCAAGTGGAGTGTTGACTCCTTTTGAATGTTGTAGTCGGACAAGGT 600282 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| | || |||||||||||||| | |||||| ||||| || || || Sbjct 600283 GCGACCATCTTCTAATTGTTTTCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGGATACC 600342 Query 199528 TTCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 ||| || || || ||| || || || ||||| |||||| | | || || || | Sbjct 600343 CTCTTTGTCTTGGAT-TTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTA 600401 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| |||||||| || | ||||| || ||||| || Sbjct 600402 AGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTG 600441 >seq4 Length=3596895 Score = 120 bits (132), Expect = 7e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| ||||| || |||||||| | ||||||||| | || || | ||| || |||| || Sbjct 3261270 GTGAAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGGGTGCGTCCGTCCTCCAATTG 3261211 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| ||||||||||| | ||| || || || || ||| ||||| ||||| ||||| Sbjct 3261210 CTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGAATGCCTTCCTTATCCTGGATCTT 3261151 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 || || ||| | |||||| | || ||| || ||||| ||||| || || || || Sbjct 3261150 GGCTTTGACATTTTCTATGGTGTCGGATGGTTCAACTTCCAAGGTGATGGTTTTGCCGGT 3261091 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| |||||||| Sbjct 3261090 GAGGGTCTTCACGAAAATTTG 3261070 Score = 114 bits (126), Expect = 3e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| || || ||||| |||| ||||||||| | ||| || | ||| || Sbjct 3259836 AGGACTAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCC 3259777 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||| ||||||||||| ||||| || || || ||| ||| || || ||| Sbjct 3259776 TCCAATTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGAGGAATACCCTCCTTGTCC 3259717 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| ||| || || ||| ||| | || || | | ||| || |||| || || || Sbjct 3259716 TGAAT-TTTGGCTTTAACGTTTTCAATTGTATCGGAAGGTTCAACCTCCAGAGTAATTGT 3259658 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| | ||||| || || ||||| Sbjct 3259657 TTTACCCGTCAATGTTTTAACGAAGATTTG 3259628 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||||| ||||| ||||| || | |||||||| | |||||| Sbjct 3261515 CGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTT 3261456 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || || ||||| ||||||||||| ||||| || || || || ||| || Sbjct 3261455 CGTCCATCCTCGAGTTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGAATGCCC 3261396 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||| || || | ||||| | || || || ||||| Sbjct 3261395 TCCTTATCTTGAATCTTAGCCTTTACATTCTCAATTGTGTCCGATGGCTCAACTTCCAAA 3261336 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || ||||| |||||||| Sbjct 3261335 GTAATAGTTTTGCCGGTGAGTGTCTTCACGAAAATTTG 3261298 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| ||||| ||||| || |||| ||| || || | || || | || ||||||| ||| Sbjct 3261042 GTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGACCGTCTTCCAACTG 3260983 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| ||||||||||| ||||| || || || || ||| ||||| || || ||||| Sbjct 3260982 CTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGAATGCCTTCCTTATCTTGGATCTT 3260923 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| ||| || | ||| |||| | ||||| ||||| ||||| || || || || Sbjct 3260922 AGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACTTCCAAGGTGATGGTTTTGCCAGT 3260863 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || ||||| Sbjct 3260862 GAGGGTCTTCACGAAGATTTG 3260842 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| ||||| ||||| || |||| ||| || || | || || | ||| ||||||| ||| Sbjct 3260284 GTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGTCCGTCTTCCAACTG 3260225 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 || ||||||||||| | ||| || || || || |||||| || || || ||||| Sbjct 3260224 TTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGAATTCCCTCCTTATCTTGGATCTT 3260165 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| ||| || | ||| |||| | ||||| ||||| ||||| || || || || Sbjct 3260164 AGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACTTCCAAGGTGATGGTTTTGCCAGT 3260105 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || ||||| Sbjct 3260104 GAGGGTCTTCACGAAGATTTG 3260084 Score = 100 bits (110), Expect = 7e-16 Identities = 152/209 (73%), Gaps = 8/209 (4%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| || || ||||| |||| ||||||||| | ||| ||| | |||||| Sbjct 3260553 AGGACTAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAA-GTCGT-CCATCT 3260496 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| | | ||||||||||| | ||| || || || || | ||| || || Sbjct 3260495 -CCAGTT---TGCCGGCGAAGATCA-ACGTTGTTGATCTGGTGGGAATCCCTCCTTATCT 3260441 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || || ||| | |||||| | || ||| || ||||| ||||| || Sbjct 3260440 TGGATCTTGGCTTTGACAT-TTCTATGGTGTCGGATGGTTCAACTTCCAAGGTGATGGTT 3260382 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || |||||||||||||| Sbjct 3260381 TTACCGGTGAGGGTCTTCACAAAAATTTG 3260353 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| || || ||||| || | ||||||||| | || || | ||| || Sbjct 3260064 AGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGTCCGTCC 3260005 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||| ||||||||||| | ||| || || || || ||||| || || Sbjct 3260004 TCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTATCT 3259945 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | ||| |||| | ||||| ||||| || || || Sbjct 3259944 TGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAAGGCTCTACTTCCAAAGTAATAGTT 3259885 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || ||||| Sbjct 3259884 TTGCCAGTCAGGGTCTTCACGAAGATTTG 3259856 Score = 95.1 bits (104), Expect = 3e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||||||||| || ||||||||||| ||| | || || ||||||| ||| |||||||| Sbjct 3260210 ATCTTCGCCGGCAAACAGTTGGAAGACGGACGCACCCTGTCCGATTATAACATCCAGAAA 3260269 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||||||||||||| | || ||| | || || Sbjct 3260270 GAGTCTACTCTTCACTTGGTATTGCGTCTCCG 3260301 Score = 95.1 bits (104), Expect = 3e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||||||||| |||||||||||||| || | || || ||||||| ||| ||||| Sbjct 3260965 CTGATCTTCGCCGGTAAGCAGTTGGAAGACGGTCGCACCCTGTCCGATTATAACATCCAG 3261024 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTG 201021 |||||||||||||||||| | || ||| Sbjct 3261025 AAAGAGTCTACTCTTCACTTGGTATTG 3261051 >seq138 Length=433312 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || ||||| || || | || ||||||||||| || | ||||| |||| ||| |||||| Sbjct 21725 GTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCCTCCAACTGTTTTCCG 21666 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || || || |||||||| || || || ||| ||||| || ||||| || ||| Sbjct 21665 GCAAAAATTAGACGCTGTTGATCTGGCGGAATACCTTCCTTATCTTGAATTTTGGCCTTA 21606 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || ||| | || || | | ||| || || | ||||| ||||| ||||| || ||| Sbjct 21605 ACATGTTCAATAGTATCCGAAGGTTCAACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTT 21546 Query 199613 TTCACAAAAATTTG 199626 || || |||||||| Sbjct 21545 TTTACGAAAATTTG 21532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178374831635266