Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq4 105 8e-18 >seq4 Length=3596895 Score = 105 bits (116), Expect = 8e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 |||||||| |||| || | || |||||||| || |||||||| || || ||||| Sbjct 3261284 AAACGCAATACCAAGTGAAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGGGTGCGT 3261225 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 |||| || | ||||| |||||||| ||||| || || || || | || | || ||| Sbjct 3261224 CCGTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGAATGCCTTCC 3261165 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTG 46555 || ||| |||||| |||| | | | |||||| | ||| || |||| ||| Sbjct 3261164 TTATCCTGGATCTTGGCTTTGACATTTTCTATGGTGTCGGATGGTTCAACTTCCAAGGTG 3261105 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||||||| || || || || || || |||||||| Sbjct 3261104 ATGGTTTTGCCGGTGAGGGTCTTCACGAAAATTTGCAT 3261067 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||| || | ||| ||| || ||||| || || ||||| || ||||| | Sbjct 3260296 ACGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGTCC 3260237 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || | ||| ||||||||||| ||||| || || || || | || | | |||||| Sbjct 3260236 GTCTTCCAACTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGAATTCCCTCCTT 3260177 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || |||||| ||| | || | | || || | || || |||| ||||| Sbjct 3260176 ATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACTTCCAAGGTGAT 3260117 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||||| || || || || || ||||||||||| Sbjct 3260116 GGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 3260081 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 |||||||| |||| || | ||| ||| || ||||| || || ||||| || ||||| Sbjct 3261056 AAACGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGA 3260997 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 |||| || | |||||| |||||||| |||| || || || || | || | || ||| Sbjct 3260996 CCGTCTTCCAACTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGAATGCCTTCC 3260937 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTG 46555 || || |||||| ||| | || | | || || | || || |||| ||| Sbjct 3260936 TTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACTTCCAAGGTG 3260877 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||||||| || || || || || ||||||||||| Sbjct 3260876 ATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 3260839 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 |||||| | | ||| | ||||| ||| | ||| ||||| || |||||||||||||| Sbjct 3261522 GCCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGA 3261463 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 | ||| || | || ||||| ||||| |||||||| |||| || || || || | || Sbjct 3261462 CAAAGTTCGTCCATCCTCGAGTTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGG 3261403 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT---TC 46542 | || |||||| || ||||| ||| | || | | ||||| |||| || Sbjct 3261402 AATGCCCTCCTTATCTTGAATCTTAGCCTTTACATTCTCAATTGTGTC---CGATGGCTC 3261346 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| || || |||||||| || || || || || || |||||||| Sbjct 3261345 AACTTCCAAAGTAATAGTTTTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 3261295 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| | || || |||| || | ||||| |||||||| Sbjct 3259815 TCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCCTCCAATTGCTTACCGGCGAAG 3259756 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-T 46521 |||| || || || || | || | | |||||||||| ||| || ||| | || | Sbjct 3259755 ATCAGACGTTGTTGATCTGGAGGAATACCCTCCTTGTCC-TGAATTTTGGCTTTAACGTT 3259697 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || ||| | ||| || |||| || || ||||| ||||||| |||||||| Sbjct 3259696 TTCAATTGTATCGGAAGGTTCAACCTCCAGAGTAATTGTTTTACCCGTCAATGTTTTAAC 3259637 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 3259636 GAAGATTTGCAT 3259625 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || |||||||| || || ||||| |||| || | ||||| |||||||| Sbjct 3260043 TCCTTCTGAATGTTGTAGTCTGACAGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAAG 3259984 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| || || || || | || | | |||||| || |||||| ||| | || Sbjct 3259983 ATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTC 3259924 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || || | || || |||| || || |||||||| ||||| || || || Sbjct 3259923 TCAATGGTATCTGAAGGCTCTACTTCCAAAGTAATAGTTTTGCCAGTCAGGGTCTTCACG 3259864 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 3259863 AAGATTTGCAT 3259853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564982643754960