Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1 174 2e-38 seq15 132 5e-26 seq4 131 2e-25 seq138 93.3 4e-14 >seq1 Length=5074932 Score = 174 bits (192), Expect = 2e-38 Identities = 378/561 (67%), Gaps = 6/561 (1%) Strand=Plus/Plus Query 132870 TTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGA 132929 ||| | |||||| | |||||| || || || ||||| ||||| | ||||| || | || Sbjct 4719617 TTGTATCAAATGTTGGAACATTAAACATGCGAAGTCACAATGTAGACCCTCATCTCGTGA 4719676 Query 132930 AATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATAT 132989 || ||||| || || |||||||| ||||| | |||||||| || |||||||| || Sbjct 4719677 GATTAGTTCATTAGAAAATGTCAAGCCAGGCATTAAACCGCGTTTCTTAAGCCAAAAGAT 4719736 Query 132990 GGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTC 133049 | || |||||||| ||||| | ||| || || || || || || | | || || Sbjct 4719737 CGAAGCAAAACTGCCACTGAAGAAAATGCCTTCAACAGCGGCAAATGCAATTACACGTTC 4719796 Query 133050 GCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTT-CTTTGA 133108 || || |||| || | ||||| || ||||| || ||||| |||| Sbjct 4719797 ACCAAAGTTGGCCGACTTAGAAGAAATCCAAGCAAGTGCCCAATCAGCCTTACGCTTTAC 4719856 Query 133109 CGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCT--TCCGAGGAACGCAC 133166 |||| ||||| || || || ||||| || || | | ||||| | | ||| | Sbjct 4719857 CGCA-GGCATTGTCTCAATAGCGTTGAATAA--GTAATTTCTTTGTTTCGAATCCTTAAT 4719913 Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 || || || || | | ||||||||| || || || || ||||| || |||||||| Sbjct 4719914 ATACGTATCAATTAATATACTATACATTTCAGAATGCACATTTTCCATAGCAATTTGAAA 4719973 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 || || ||||| || ||||| || ||||||||||| ||| || || || | ||| Sbjct 4719974 TCCATAGAAGCAACGTGCCTCTGTAACTTGCACTTCTTGGCTGAAGCGTTCAACTAAATT 4720033 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||| || || || || || |||||||| ||||| | |||||| |||||||| || Sbjct 4720034 TTCATTCACAATACCATCAGATGCGGCGAAGAAGGCTAACACGTGTGAAATGAAATGTCG 4720093 Query 133347 CTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGAC 133406 || || || | | || |||| || | | || || || || || || ||||| || Sbjct 4720094 TTCATTATCAGTGAGACGTGCCCAATCATCCATATCTTTAGAAAGATCTACTTCCTCAAC 4720153 Query 133407 GGTCCAAAACGACGCCTCGGC 133427 ||||| ||||| || || || Sbjct 4720154 TGTCCAGAACGATGCTTCTGC 4720174 >seq15 Length=2140121 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38243 aaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| ||||| | || || || ||||||||| | || |||||| | | Sbjct 600445 AATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCTTC 600386 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||| | |||| ||||||| ||||||||||| || ||| | ||||| Sbjct 600385 TGACACCATCGAAAATGTCAAAGCTAAAATCCAAGACAAAGAGGGTATCCCCCCAGACCA 600326 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | || | ||| || ||||| | || || | |||||| | ||||||||| Sbjct 600325 ACAGCGTTTGATCTTCGCCGGAAAACAATTAGAAGATGGTCGCACCTTGTCCGACTACAA 600266 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| |||||||| | || || || ||||| |||||| | |||| || Sbjct 600265 CATTCAAAAGGAGTCAACACTCCACTTGGTTCTGCGTCTTCGAGGTGG 600218 >seq4 Length=3596895 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||||||||||||| | || || || | || Sbjct 3261067 ATGCAAATTTTCGTGAAGACCCTCACCGGCAAAACCATCACCTTGGAAGTTGAACCATCC 3261126 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | |||| || |||| || || || || |||||| | || ||| Sbjct 3261127 GACACCATAGAAAATGTCAAAGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGATCAA 3261186 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | ||| || || || |||| |||| |||||||| ||||||||| Sbjct 3261187 CAACGTTTGATCTTCGCCGGTAAGCAATTGGAGGACGGACGCACCCTGTCAGACTACAAC 3261246 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||||||| | || || || ||||| |||||||| | || || Sbjct 3261247 ATTCAAAAGGAATCAACTCTTCACTTGGTATTGCGTTTGCGTGGTGG 3261293 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||||||||||||| | || || ||| || | Sbjct 3260081 ATGCAAATCTTCGTGAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTAGAGCCCTCA 3260140 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || |||| |||| | || |||| || || ||||||||||| | || || Sbjct 3260141 GATACCATTGAGAACG-TTAAGGCTAAGATCCAAGATAAGGAGGGAATTCCACCAGATCA 3260199 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| ||||||||| |||| |||| |||||||| ||| || || Sbjct 3260200 ACAACGTTTGATCTTCGCCGGCAAACAGTTGGAAGACGGACGCACCCTGTCCGATTATAA 3260259 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| || || | || || || ||||| ||||| Sbjct 3260260 CATCCAGAAAGAGTCTACTCTTCACTTGGTATTGCGT 3260296 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||||||||||||| | || || ||| || | Sbjct 3260839 ATGCAAATCTTCGTGAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTAGAGCCCTCA 3260898 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || |||| |||| | || |||| || || || || ||||| | || || Sbjct 3260899 GATACCATTGAGAACG-TTAAGGCTAAGATCCAAGATAAGGAAGGCATTCCACCAGATCA 3260957 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || || || | ||| || || ||| |||| |||| |||||||| ||| || || Sbjct 3260958 ACAACGTCTGATCTTCGCCGGTAAGCAGTTGGAAGACGGTCGCACCCTGTCCGATTATAA 3261017 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || || || ||||| |||||||| | || || Sbjct 3261018 CATCCAGAAAGAGTCTACTCTTCACTTGGTATTGCGTTTGCGTGGTGG 3261065 Score = 107 bits (118), Expect = 2e-18 Identities = 162/229 (71%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 38231 ACTCTTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGA 38290 ||||||| |||| ||||||| ||||| || || | || ||||| |||||||| | || Sbjct 3259157 ACTCTTTCCAAAA-TGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGA 3259215 Query 38291 CGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAAT 38350 || || | |||| | | ||| |||||| || || | |||||||| ||||| Sbjct 3259216 GGTTGAACCATCCGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAAT 3259275 Query 38351 TCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCT 38410 ||| | || ||||| || | || | || || || || ||||| |||| |||||| | Sbjct 3259276 CCCCCCAGATCAACAACGTTTAATCTTTGCCGGTAAGCAACTGGAAGACGGACGCACCTT 3259335 Query 38411 CAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| ||||||||||| ||||| | || || |||||||| || ||| Sbjct 3259336 GTCCGATTACAACATCCAGAAGGAGTCTACACTTCATTTGGTTCTTCGT 3259384 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | ||||| ||||| || || | || || || | || Sbjct 3259625 ATGCAAATCTTCGTTAAAACATTGACGGGTAAAACAATTACTCTGGAGGTTGAACCTTCC 3259684 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||||| |||||| ||||| | ||||| ||||| ||||| | || || Sbjct 3259685 GATACAATTGAAAACG-TTAAAGCCAAAATTCAGGACAAGGAGGGTATTCCTCCAGATCA 3259743 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || || || | ||| || || || |||| |||| || ||| | ||||||||| Sbjct 3259744 ACAACGTCTGATCTTCGCCGGTAAGCAATTGGAGGACGGACGTACCTTGTCCGACTACAA 3259803 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| |||||| | || || || || || || || ||| | || || Sbjct 3259804 CATCCAGAAGGAATCAACCCTCCACTTAGTCCTTCGCTTGCGTGGTGG 3259851 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| | ||||| ||||||||||| | || || ||| | || Sbjct 3259397 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 3259456 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| ||||| | || || || ||||| ||| | || ||| Sbjct 3259457 GATACTATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 3259516 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| ||| ||||||||| |||| || | ||||| || ||| || || Sbjct 3259517 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGATTATAAT 3259576 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || |||||| | || | ||||| || || || ||| | || || Sbjct 3259577 ATTCAGAAGGAATCCACTTTACATTTAGTTCTACGCTTGCGTGGTGG 3259623 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || |||||||| || || | || || ||| | | Sbjct 3259853 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACTATTACTTTGGAAGTAGAGCCTTCA 3259912 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| |||| | || |||| || || |||||||| || | || || Sbjct 3259913 GATACCATTGAGAACG-TTAAGGCTAAGATCCAAGATAAGGAGGGAATCCCACCAGATCA 3259971 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| || || || |||| |||| |||||||| |||||||| Sbjct 3259972 ACAACGTTTGATCTTCGCCGGTAAGCAATTGGAGGACGGACGCACCCTGTCAGACTACAA 3260031 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || |||||| | || || || || || || || ||| | || || Sbjct 3260032 CATTCAGAAGGAATCAACCCTCCACTTAGTCCTTCGCTTGCGTGGTGG 3260079 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/231 (71%), Gaps = 16/231 (7%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| || |||||||||||| | || || || | || Sbjct 3260350 ATGCAAATTTTTGTGAAGACCCTCACCGGTAAAACCATCACCTTGGAAGTTGAACCATCC 3260409 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | ||| | | |||| || |||| || || ||||| |||||| || || || Sbjct 3260410 GACACCATAGAAATG-TCAAAGCCAAGATCCAAGATAAGGAGGG-ATTCCCACCAGATCA 3260467 Query 38363 ACAGCGGCTCATTTACGCGGGCAAAC---AGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| | | | || | ||| ||||||| || |||||||| | || |||||| Sbjct 3260468 ACAAC-GTTGATCTTCGCCGGCAAACTGGAGATGGACGACTTG-------TC--CGACTA 3260517 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| |||||| | || || || || || || || ||| | || || Sbjct 3260518 CAACATCCAGAAGGAATCAACCCTCCACTTAGTCCTTCGCTTGCGTGGTGG 3260568 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| |||||||| || || | || || ||| | | Sbjct 3261295 ATGCAAATTTTCGTGAAGACACTCACCGGCAAAACTATTACTTTGGAAGTTGAGCCATCG 3261354 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || || | || || ||||| ||||| | || ||| Sbjct 3261355 GACACAATTGAGAATGTAAAGGCTAAGATTCAAGATAAGGAGGGCATTCCACCAGATCAA 3261414 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || || | ||| || || || || || || | || || | ||||||||| Sbjct 3261415 CAACGTCTGATCTTCGCCGGTAAGCAACTCGAGGATGGACGAACTTTGTCCGACTACAAT 3261474 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || |||||| |||| || ||||||||||| ||| Sbjct 3261475 ATACAGAAGGAATCGACACTCCATTTGGTGCTACGT 3261510 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/156 (72%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 38315 AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCAT 38374 |||| |||| | || |||| || || ||||||||||| | || ||||| || | || Sbjct 3260683 AACG-TTAAGGCTAAGATCCAAGATAAGGAGGGAATTCCACCAGATCAACAACGTTTGAT 3260741 Query 38375 TTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 | ||| || || || |||| |||| |||||||| ||||||||||||||| ||||| Sbjct 3260742 CTTCGCCGGTAAGCAATTGGAGGACGGACGCACCCTGTCCGACTACAACATCCAGAAGGA 3260801 Query 38435 AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 | | || || || || || || || ||| | || || Sbjct 3260802 ATCAACCCTCCACTTAGTCCTTCGCTTGCGTGGTGG 3260837 >seq138 Length=433312 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38243 aaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||||||||| || |||||||| |||||||| | || || || | | Sbjct 21528 AATGCAAATTTTCGTAAAAACCCTTACGGGCAAGACCATCACTCTTGAGGTTGAACCTTC 21587 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || |||| | ||||| | || || || || ||||| | || || Sbjct 21588 GGATACTATTGAACATGTTAAGGCCAAAATTCAAGATAAGGAAGGTATTCCGCCAGATCA 21647 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || |||| || || |||||| |||| || | ||||| | ||||| || Sbjct 21648 ACAGCGTCTAATTTTTGCCGGAAAACAGTTGGAGGATGGTCGCACATTGGCTGACTATAA 21707 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || || || | ||| | ||||| || || ||| | ||||| ||| Sbjct 21708 TATTCAGAAAGAGTCTACGTTACATTTAGTCCTTCGTCTTAGAGGTGGC 21756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499946484312320