Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq11 102 1e-16 >seq11 Length=2963766 Score = 102 bits (112), Expect = 1e-16 Identities = 873/1394 (63%), Gaps = 34/1394 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||| | ||||| ||||| || || |||||||| ||||| |||||||| ||| | | Sbjct 1981458 CCACAGCATATGTTAATGCGCGTTGCCATCGGTATACATGGTGAAGATATCGATGCAGCA 1981517 Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | || |||||| || | | ||| | | ||| || | || || | || || ||||| Sbjct 1981518 ATTGAAACATACAACTTGCTTTCCGAGCGTTATTTT-ACACATGCTTCGCCGACACTCTT 1981576 Query 111731 CAACGCTGGTACACCAAGACCC-CAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 | |||| || | || | || ||| |||| || ||| | || | | ||| | Sbjct 1981577 CGCTGCTGCCAC-CAAACAGCCGCAATTGTCATCATGCTTCTTACTTACCATGGTGGACG 1981635 Query 111790 ATTCAATCAATGGCATTTACGGCACTCT-CAC-TGAATGTGCCCAAATCTCAAAGTGGGC 111847 |||| || | || |||| | || ||| ||| | ||||||| || ||||| | || Sbjct 1981636 ATTCCATTGACGGTATTTTCA-CA-TCTGCACATCAATGTGCTTTGATTTCAAAATCTGC 1981693 Query 111848 TGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTAC 111907 ||||||||| || | | | ||| | | || || || ||| || || Sbjct 1981694 TGGTGGTATTGGTCTAAATGTACATTGCATACGCGCGAAAGGCACTGCGATTGCGGGCAC 1981753 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 |||||| || ||||| | | |||||||| || || || || ||| || || Sbjct 1981754 AAATGGCACCTCGAATGGTTTGGTGCCAATGCTGCGAGTGTTCAATAATGTAGCACGTTA 1981813 Query 111968 TGTAAACCAAGCTGGGCGTC----GCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 112023 ||| | |||| ||| || || ||| || | || |||| || || ||||||| Sbjct 1981814 TGTGGATCAAGGTGGCGGTAAACGGCCAGGCGCCTTTGCCA-TCTACCTGGAACCATGGC 1981872 Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGT 112083 | || ||||| | || || | || ||| ||| ||| | || ||| | | | Sbjct 1981873 ATGCTGATATATTCGAATTTTTGGATTTGAAGAAAAACACCGGTAAAGAAGAG-CACCGC 1981931 Query 112084 GCC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 ||| | ||| | |||| |||||| ||||| || ||||| || |||| | || || | Sbjct 1981932 GCCAGAGATTTGTTCTACGCTCTGTGGATACCTGATCTATTTATGAGACGTGTCGAAGCC 1981991 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGT 112202 | || | ||||| || | || ||| |||| || ||| | || | |||| Sbjct 1981992 AATGAAGACTGGTCGCTAATGTGCCCACACAAATGTCCTGGTTTACATGAAGTGTGGGGT 1982051 Query 112203 GAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTG 112262 |||||||||||| | || || || || | ||| | || || | | || ||| Sbjct 1982052 GAGGAGTTTGAAAAATTGTATCTGAAATATGAACAGGAAGGACGTGCTAATAAGAAGGTA 1982111 Query 112263 CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAT 112322 ||| | | ||| || ||| | | || ||| |||||||| ||||| || Sbjct 1982112 AAAGCACAAAGTCTTTGGTTTGCCATTATTGAATCGCAAGTAGAGACTGGCACACCGTAC 1982171 Query 112323 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 112382 ||| | || ||||| || ||||| | |||||||||||| ||||| | || || ||| Sbjct 1982172 ATGTTATATAAAGATGCTTGTAATCGAAAGAGTAATCAGCAGAATGTTGGCACAATTAAG 1982231 Query 112383 AGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 112442 || || | ||||| ||||| |||||| | | | |||||| ||||||||| Sbjct 1982232 TGTAGTAATTTATGTACCGAAATTGTGGAATATTCGGCACCCGATGAGGTAGCTGTGTGT 1982291 Query 112443 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTAT 112502 ||| | || || ||||| | || || ||| || ||| || || | ||| | | Sbjct 1982292 AACTTAGCTTCGATCGCATTGAACATGTTTGTCACACCCGAG---AAAACGTATGACTTT 1982348 Query 112503 GAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGA 112562 | ||| | || || || || || || ||| || | || | | | || || | Sbjct 1982349 AAGCGCCTCAAAGAGGTCACCAAGACCGTTACACGTAATTTGAATAAAATCATAGACATT 1982408 Query 112563 AATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTC 112622 ||| ||| || | | || ||||| ||| | ||||| ||||| || ||| | Sbjct 1982409 AATCATTATCCAATACCGGAGGCAAAGAAATCGAATTTCAGACATCGTCCCATCGGTATT 1982468 Query 112623 GGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAA 112682 || || |||||| | || || | || ||| | || | ||| || || ||| Sbjct 1982469 GGCGTACAAGGTTTTGCCGACGCTTTAATTTTAATGCGTTATCCATACGAAAGTGATGAA 1982528 Query 112683 G----CGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGC 112738 | | ||||||| | ||||| || || || || | | || || || | Sbjct 1982529 GCATTCCGCTTAAATCAA----CAAATATTCGAAACTATTTACTATGGTGCGCTGGAATC 1982584 Query 112739 GAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTC 112798 |||| || || || || |||| | |||||||| | || ||||| || | || Sbjct 1982585 CAGTTGCGAATTAGCCGAAAAATATGGCACTTATGAAACATATGTAGGTTCACCCG-TTA 1982643 Query 112799 ACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-CTTCACTACGACTGG 112856 ||||| | || || | ||| ||||||| | || |||||| || | | ||| Sbjct 1982644 GTAAGGGTATTCTACAGTATGACATGTGGG-ATAAGACACCAAGTGATCTTTGGAATTGG 1982702 Query 112857 GACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGATGGCAC 112914 || | ||||| || ||| | | || |||||||| ||||| || | || | Sbjct 1982703 ACCGAATTGAAGGAGAAAATTAAGCAACATGGCGTTCGTAAC--TCTTTGCTGCTTGCGC 1982760 Query 112915 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACA 112974 | |||||||| || || || |||||||| |||| || ||||| | |||||||| |||| Sbjct 1982761 CCATGCCAACTGCTTCAACAGCACAAATTATGGGCAACAATGAGTCATTTGAACCATACA 1982820 Query 112975 CGACGAACATCTAT 112988 | | || |||||| Sbjct 1982821 CTTCCAATATCTAT 1982834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620461529582560