Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1087 107 2e-18 >seq1087 Length=66653 Score = 107 bits (118), Expect = 2e-18 Identities = 171/243 (70%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 154864 TGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGAC 154923 |||||||| | ||||| || || ||||| ||| ||||||||||| | || Sbjct 60405 TGTCATGTCTGATGATCACCTATCCATCCACAATGGGTGTATTTGAGGAGACTGTTGCTG 60346 Query 154924 AGATATGTAAGATCGTTCATGACA-ATGGTGGTCAGGTATATCTTGATGGAGCAAATCTA 154982 | |||||| | | | ||| ||| |||| || ||||||||| | || || || ||| | Sbjct 60345 ATATATGTGATCTGATCCAT-ACACATGGCGGACAGGTATATTTGGACGGCGCTAATATG 60287 Query 154983 AATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAAC 155042 ||||||||||| || ||| || | || ||||| ||||| | ||| | || Sbjct 60286 AATGCACAGGTTGGTCTATGTCGCCCCGGCGATTATGGCAGTGATGTCTCTCACTTGAAT 60227 Query 155043 TTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGT 155102 |||||||||| || || || ||||| || ||||| |||||||| | |||||||| ||| Sbjct 60226 CTACATAAAACTTTTTGCATACCACACGGTGGTGGTGGTCCTGGTATGGGTCCTATCGGT 60167 Query 155103 GTA 155105 ||| Sbjct 60166 GTA 60164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578950720688320