Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq4 150 4e-31 seq15 132 1e-25 seq138 127 5e-24 >seq4 Length=3596895 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||||||||| |||||||| || || || ||||||| || || | || || Sbjct 3261051 CAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGACCGTC 3260992 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||||||||| |||||||| || |||||||| ||||| ||||||||||| || || Sbjct 3260991 TTCCAACTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGAATGCCTTCCTTATC 3260932 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| || || ||| |||||||||||||| || || || ||||| | ||| | || Sbjct 3260931 TTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACTTCCAAGGTGATGGT 3260872 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || ||||| | |||||| Sbjct 3260871 TTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 3260839 Score = 134 bits (148), Expect = 3e-26 Identities = 155/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||| || ||||| || || || |||||||||| |||| || | || ||||| || || Sbjct 3259371 TGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAAG-GTGCGTCCGTCTTCCAGTTG 3259313 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || ||||| | |||||||| ||||| || || ||||||||||||||||| || Sbjct 3259312 CTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCTTGAATCTT 3259253 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || || ||||| || || || ||| || || || || | ||||| || || Sbjct 3259252 AGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTGCCAGT 3259193 Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142 ||| || || ||||| | |||||||| Sbjct 3259192 CAAGGTCTTCACGAAGATTTGCATTT 3259167 Score = 132 bits (146), Expect = 1e-25 Identities = 154/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 ||| || || || || || || || ||||| |||| |||| || | || || || | | Sbjct 3259828 GTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAG-GTACGTCCGTCCTCCAATT 3259770 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||||||| |||||||| || |||||||| ||||||||||| || || ||||| ||||||| Sbjct 3259769 GCTTACCGGCGAAGATCAGACGTTGTTGATCTGGAGGAATACCCTCCTTGTCCTGAATTT 3259710 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | || ||||| ||||| || || ||| ||| || || || |||| || || || | Sbjct 3259709 TGGCTTTAACGTTTTCAATTGTATCGGAAGGTTCAACCTCCAGAGTAATTGTTTTACCCG 3259650 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||| ||||| | |||||| Sbjct 3259649 TCAATGTTTTAACGAAGATTTGCAT 3259625 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | ||||||||| |||||||| || || || ||||||| || || | Sbjct 3260299 GAGACGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGACAGGGTGCG 3260240 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || ||||| | ||| || || |||||||| | |||||||| ||||| ||||| || || Sbjct 3260239 TCCGTCTTCCAACTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGAATTCCCTC 3260180 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || ||||| || || ||| |||||||||||||| || || || ||||| | ||| Sbjct 3260179 CTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACTTCCAAGGT 3260120 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | || || ||||| | |||||| Sbjct 3260119 GATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 3260081 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 |||||| || || |||||||| ||||||| || || | ||||| || | ||| || || Sbjct 3259594 AGTGGATTCCTTCTGAATATTATAATCGGACAGTGTGCGTCCATCCTCCAACTGTTTGCC 3259535 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 ||||| || | |||||||| ||||| || || ||||| || ||||||||||| || Sbjct 3259534 AGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCTTT 3259475 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||| |||||||| || || ||| || || || | || | || ||||| |||||||| Sbjct 3259474 GACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGTCAAAGT 3259415 Query 195123 TTTTACGAACACTTGCAT 195140 ||| ||||| | ||||| Sbjct 3259414 TTTGACGAAAATCTGCAT 3259397 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||||||||| || || |||||||| ||||| || | || || | || || Sbjct 3261279 CAATACCAAGTGAAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGGGTGCGTCCGTC 3261220 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || | |||||||| |||||||| | |||||||| ||||| ||||||||||| || || Sbjct 3261219 CTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGAATGCCTTCCTTATC 3261160 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || || || ||||| || || |||||||| || ||| ||||| | ||| | || Sbjct 3261159 CTGGATCTTGGCTTTGACATTTTCTATGGTGTCGGATGGTTCAACTTCCAAGGTGATGGT 3261100 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || ||||| | |||||| Sbjct 3261099 TTTGCCGGTGAGGGTCTTCACGAAAATTTGCAT 3261067 Score = 111 bits (122), Expect = 3e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || || || || ||||| ||||| || | || || | || || || | || Sbjct 3260056 GTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGTCCGTCCTCCAATTG 3259997 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| | |||||||| ||||| || || || || || ||||| || || Sbjct 3259996 CTTACCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTATCTTGGATCTT 3259937 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| |||||||||||||| || ||| || ||||| | |||| || || || || Sbjct 3259936 AGCCTTAACGTTCTCAATGGTATCTGAAGGCTCTACTTCCAAAGTAATAGTTTTGCCAGT 3259877 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | |||||| Sbjct 3259876 CAGGGTCTTCACGAAGATTTGCAT 3259853 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || || || || || || ||||| |||| || || | || || || | || Sbjct 3260814 GTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAATTG 3260755 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| | |||||||| ||||| ||||| || || || ||||| || || Sbjct 3260754 CTTACCGGCGAAGATCAAACGTTGTTGATCTGGTGGAATTCCCTCCTTATCTTGGATCTT 3260695 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGA 195083 ||| |||||||||||||| || || Sbjct 3260694 AGCCTTAACGTTCTCAATGGTATCTGA 3260668 >seq15 Length=2140121 Score = 132 bits (146), Expect = 1e-25 Identities = 160/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCAT 194986 || ||| | ||| || || ||||| |||||||| ||||| |||| |||| || | |||| Sbjct 600232 CAGAACCAAGTGGAGTGTTGACTCCTTTTGAATGTTGTAGTCGGACAAG-GTGCGACCAT 600290 Query 194987 CTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGT 195046 |||| | || || || |||||||| | || ||||||||||| || || || ||||||| Sbjct 600291 CTTCTAATTGTTTTCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGGATACCCTCTTTGT 600350 Query 195047 CTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCG 195106 |||| ||||| ||||| || || |||||||| ||| || || || | ||| | | Sbjct 600351 CTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTGATGG 600410 Query 195107 TCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||| || || || ||||| ||||| | |||||| Sbjct 600411 TCTTACCAGTTAAGGTTTTGACGAAAATCTGCATT 600445 >seq138 Length=433312 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || |||||||| |||||||| || || || | || | ||||| || | ||| || || Sbjct 21725 GTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCCTCCAACTGTTTTCCG 21666 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || || || ||||| ||||| ||||| ||||| || ||||||||||| ||| Sbjct 21665 GCAAAAATTAGACGCTGTTGATCTGGCGGAATACCTTCCTTATCTTGAATTTTGGCCTTA 21606 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || | ||||| || |||||| ||| || ||||| || | ||||| || || | ||| Sbjct 21605 ACATGTTCAATAGTATCCGAAGGTTCAACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTT 21546 Query 195124 TTTACGAACACTTGCATT 195141 |||||||| | ||||||| Sbjct 21545 TTTACGAAAATTTGCATT 21528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108967036995866