Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq4 84.2 1e-11 >seq4 Length=3596895 Score = 84.2 bits (92), Expect = 1e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| || || | ||| ||| |||||||| ||||| || || || | ||| |||| || Sbjct 3259606 AACTAAATGTAAAGTGGATTCCTTCTGAATATTATAATCGGACAGTGTGCGTCCATCCTC 3259547 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || |||||| || || || || | ||||| || ||| | || | || ||||| || Sbjct 3259546 CAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTG 3259487 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||| || |||||| || || || | || | |||||| || | || |||||| Sbjct 3259486 AATTTTAGCTTTGAC--ATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTT 3259429 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| | ||| || || || |||||||| Sbjct 3259428 TTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 3259397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324490383626544