Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq11 309 3e-79 seq1 309 3e-79 >seq11 Length=2963766 Score = 309 bits (342), Expect = 3e-79 Identities = 1182/1853 (64%), Gaps = 40/1853 (2%) Strand=Plus/Minus Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| ||||||||||| | || | ||| || | ||| || || || |||||||| || Sbjct 1983221 TTTGTCCACAGTAAATTGTATAGCATTTGCGGCGGGTTTCGTGCGCAAGTAATACATGCC 1983162 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 ||| || | |||| |||| || || || || ||| ||| | ||| ||| | || Sbjct 1983161 AGTTTTGAGACCTGCCTTCCAACCGTAAAAGTGTATAGAAGTAAGTTTGCCATAGTTTGG 1983102 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 ||| | | || || || | || ||||| ||||| || || || || | ||| || || Sbjct 1983101 TTCAGCCACGTGTATGTTGAACGACTGACTTTGATCGATGAAAGCGCCACGATCTGCAGC 1983042 Query 47153 CATATCTAAAATAACCCTTTGT--GGTATCTCCCATACTGTTTTATA-AATTTGTTTAAT 47209 ||| | | | | ||| | |||||||| || ||||| || || | | || | Sbjct 1983041 CATTTTGAT--TGAGGTTTTCACAGAAATCTCCCAAACAGTTTTGTATAAATCGCGTA-T 1982985 Query 47210 GTCTTCTGGGA--GATT-AGTATTTTGAATAGATCCTCCgttttctataattttgttttt 47266 | | ||| | |||| | | ||||| || || || | | |||||| || ||||| Sbjct 1982984 ATGCTGTGGTATGGATTCAATGTTTTGTATCGAGCCGCGACTAGTTATAATATTATTTTT 1982925 Query 47267 taattcatttgaccaaagttttcgttcagtta-atgtttttaaAAGATGAGGATTAACAA 47325 | |||| ||| | ||||||| || | | ||| ||| |||| |||| Sbjct 1982924 CATATCATCATCCCACAAACCCAACTCAGTTAGATCGCGTAACAAG-TGATGATTTACAA 1982866 Query 47326 TTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAG 47385 ||||||||| || || || || | || |||| ||||| || |||||||| | | Sbjct 1982865 CTTGAAATTCACCCGAAAGCACACGGCGTGTATAGATATTGGAAGTGTATGGTTCAAATG 1982806 Query 47386 ATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGC 47445 | ||||| || || | |||||| || ||||| || || ||||||| |||| | || Sbjct 1982805 ACTCATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAAGCAGCAAAG 1982746 Query 47446 TATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTG 47505 || | || |||| || | || | |||||| ||||||||| Sbjct 1982745 AGTTACGAACGCCATGTTGCTTAATTTTCTCCTTCAATTCGGTCCAATTCCAAAGATCAC 1982686 Query 47506 ATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTAT 47565 ||| || ||| | ||||| || ||||| || ||||| | || ||||| || Sbjct 1982685 TTGGTGTCTTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGGTGAACCTACAT 1982626 Query 47566 ATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAAT 47625 |||||| ||||| || ||| || || | ||| ||||| | ||||| |||| ||| | Sbjct 1982625 ATGTTTCATAAGTGCCATATTTTTCGGCTAATTCGCAACTGGATTCCAGCGCACCATAGT 1982566 Query 47626 ATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGA--TTCAAAAGGATA 47683 | || ||||| ||||||| | |||| |||||| || | ||| | ||||| Sbjct 1982565 AAATAGTTTCGAATATTTGTTGATTTAAGCGGAATGCTTC--ATCACTTTCGTATGGATA 1982508 Query 47684 NNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGT 47743 || | || || || ||||| || |||||||| || || | ||| | Sbjct 1982507 ACGCATTAAAATTAAAGCGTCGGCAAAACCTTGTACGCCAATACCGATGGGACGATGTCT 1982448 Query 47744 TTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAG 47803 ||| || || || || |||| |||||| | || || ||||| |||||||| | Sbjct 1982447 GAAATTCGATTTCTTTGCCTCCGGTATTGGATAATGATTAATGTCTATGATTTTATTCAA 1982388 Query 47804 ANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATT--- 47860 | | ||| | | ||||| ||| || | || | Sbjct 1982387 ATTACGTGTAACGGTCTTGGTGACCTCTTTGAGGCGCTTAAAGTCATACGTTTTCTCGGG 1982328 Query 47861 TATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATT 47920 | | |||||| | || | ||| || || |||| ||||| ||||||||||||| || Sbjct 1982327 TGTGACAAACATGTTCAATGCGATCGAAGCTAAGTTACACACAGCTACCTCATCGGGTGC 1982268 Query 47921 AGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATG 47980 | ||||| | ||||| | ||||| ||||| ||| || || || || | ||| || || Sbjct 1982267 CGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGCTG 1982208 Query 47981 ATTAttnnnnttGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTG 48040 |||| | ||||| || || || || | ||| | ||||| ||||| |||| || Sbjct 1982207 ATTACTCTTTCGATTACAAGCATCTTTATATAACATGTACGGTGTGCCAGTCTCTACTTG 1982148 Query 48041 AGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTA------TAACAGCTCTAGCTTT 48094 |||||||| || | ||||| | | || |||| || ||| | ||| Sbjct 1982147 CGATTCAATAATGGCAAACCAAAGACTTTGTGCTTTTACCTTCTTATTAGCACGTCCTT- 1982089 Query 48095 ATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAA 48154 | ||||| ||||| ||| || || ||||| || || || |||| | || ||| Sbjct 1982088 -----CCTGTTCATATTTCAGATACAATTTTTCAAACTCCTCACCCCACACTTCATGTAA 1982034 Query 48155 CCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCAT 48214 |||||||||| | || ||||| | ||||| || |||| || || | |||| Sbjct 1982033 ACCAGGACATTTGTGTGGGCACATTAGCGACCAGTCTTCATTGGCTTCGACACGTCTCAT 1981974 Query 48215 AAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCC 48274 ||||| ||| |||||||| ||||| || ||||| || | | | ||||| || || Sbjct 1981973 AAATAGATCAGGTATCCACAGAGCGTAGAACAAATCTCTGGCGCGGTGCTCTTCTTTACC 1981914 Query 48275 ACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATAT 48334 | || | || | || | ||| || | ||||||||||||||||||||| | || || Sbjct 1981913 GGTGTTTTTCTTCAAATCCAAAAATTCGAATATATCAGCATGCCATGGTTCCAGGTAGAT 1981854 Query 48335 TGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATA 48394 || | | ||||| |||||| || |||||||| | ||| | || ||| || | Sbjct 1981853 GGCAAAGGCGCCTGGCCGTTTACCGCCACCTTGATCCACATAACGTGCTACATTATTGAA 1981794 Query 48395 AACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCC 48454 |||| | |||||| || | |||||| || | ||||| || |||| ||| | | || Sbjct 1981793 CACTCGCAGCATTGGCACCAAACCATTCGAGGTGCCATTTGTGCCCGCAATCGCAGTGCC 1981734 Query 48455 ACTAGCTCTTAT---AT-TACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510 | || | ||| || ||| ||| | ||| |||||||| || ||| || || | Sbjct 1981733 TTTCGCGCGTATGCAATGTAC--ATT--TAGACCAATACCACCAGCAGATTTTGAAATCA 1981678 Query 48511 GAGCACACCG-TTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAAT 48569 |||||| | | | | | | | |||| || || || ||| || | ||| | | | Sbjct 1981677 AAGCACATTGATGTGCAGATGTGA-AAATACCGTCAATGGAATCGTCCACCATGGTAAGT 1981619 Query 48570 AGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCA 48629 | || || |||| |||||| || || | | | || | ||| || || ||| Sbjct 1981618 AAGAAGCATGATGACAATTGCGGCTGTTTGGTGGCAGCAGCGAAGAGTGTCGGCGAAGCA 1981559 Query 48630 TGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCAT 48689 || |||| | ||| || | ||| || ||||||||||| | | ||| ||||| Sbjct 1981558 TGTGTAAAATAACGCTCGGAAAGCAAGTTGTATGTTTCAATTGCTGCATCGATATCTTCA 1981499 Query 48690 TGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTA 48749 ||||||||| || | || ||||||||||||| || |||| |||||||||||| | Sbjct 1981498 CCATGTATACCGATGGCAACGCGCATTAACATATGCTGTGGTCGCTCAACAATTTTGCCA 1981439 Query 48750 TTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 || | || | | ||| || ||| | ||||||||||||||||| ||||| Sbjct 1981438 TTCAACTTGAGCAAATAGGAACGTTCAAGCGTTTTAAAACCAAAATAATTGTA 1981386 >seq1 Length=5074932 Score = 309 bits (342), Expect = 3e-79 Identities = 490/700 (70%), Gaps = 2/700 (0%) Strand=Plus/Plus Query 18795 ATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAAC 18854 ||| || ||||||| ||||| ||| | | ||||||||| || ||||| ||||| Sbjct 4719476 ATCAGCCACAAATTCGATATAATCAGACATTAGTTTACAATTCATACCGATTAAATTAAC 4719535 Query 18855 AGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATAC 18914 || | || || || | |||||||| || || | || || ||||| || || || Sbjct 4719536 CGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTGTAACAGCTTCTGAAATTATTTCAAC 4719595 Query 18915 AACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACA 18974 || || || | | | || | || | ||||| ||||| |||||||| || ||||| Sbjct 4719596 AATTCGTTCATTACTTGGTTTTTGTATCAAATGTTGGAACATTAAACATGCGAAGTCACA 4719655 Query 18975 ATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCC 19034 |||||| ||||| |||| || | ||||||||||||||| || |||||||| | || Sbjct 4719656 ATGTAGACCCTCATCTCGTGAGATTAGTTCATTAGAAAATGTCAAGCCAGGCATTAAACC 4719715 Query 19035 TCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGC 19094 | ||| || | ||| || || |||||||| ||| ||||| || ||||| || || Sbjct 4719716 GCGTTTCTTAAGCCAAAAGATCGAAGCAAAACTGCCACTGAAGAAAATGCCTTCAACAGC 4719775 Query 19095 TGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGC 19154 ||||| |||| || | ||| ||| | | || ||| | |||||| ||||| Sbjct 4719776 GGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTAGAAGAAATCCAAGCAAGTGC 4719835 Query 19155 CCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACG 19214 |||||||||||| ||||| ||||||||||| |||| || |||| || | | Sbjct 4719836 CCAATCAGCCTTACGCTTTACCGCAGGCATTGTCTCAATAGCGTTGAATAAGTAATTTCT 4719895 Query 19215 CTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATT 19274 | | | ||| |||| ||| | ||| || |||| ||| |||||||| ||||| | ||| Sbjct 4719896 TTGTTTCGAATCCTTAATATACGTATCAATTAATATACTATACATTTCAGAATGCACATT 4719955 Query 19275 TTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACA 19334 ||| ||||| || |||||||| || || || | ||| ||||| | || ||||| | Sbjct 4719956 TTCCATAGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTAACTTGCACTTCTTGGCT 4720015 Query 19335 AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATAC 19394 || | ||| || ||||||||||| || || |||||| || || || || ||||| || Sbjct 4720016 GAAGCGTTCAACTAAATTTTCATTCACAATACCATCAGATGCGGCGAAGAAGGCTAACAC 4720075 Query 19395 ATGTTTAATAAAATGTTTTTCA-TCTGAGGTTAATGTATTCCAATCATTAATATCTTTAG 19453 ||| ||| |||||| |||| | | || | || |||||||| |||||||||| Sbjct 4720076 GTGTGAAATGAAATGTCGTTCATTATCAGTGAGACGT-GCCCAATCATCCATATCTTTAG 4720134 Query 19454 ATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 | | ||||||||| ||||||||||| || || || ||||| Sbjct 4720135 AAAGATCTACTTCCTCAACTGTCCAGAACGATGCTTCTGC 4720174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561854459820720