Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq138 149 5e-31 seq4 145 6e-30 seq15 122 7e-23 seq385 87.8 1e-12 >seq138 Length=433312 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | |||||||| | ||||| ||||| || ||||| || || || Sbjct 21755 CCACCTCTAAGACGAAGGACTAAATGTAACGTAGACTCTTTCTGAATATTATAGTCAGCC 21696 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| ||||| || || || ||||| || | |||||||||||| |||||| Sbjct 21695 AATGTGCGACCATCCTCCAACTGTTTTCCGGCAAAAATTAGACGCTGTTGATCTGGCGGA 21636 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| |||||||||||||| || ||| ||| | ||| || || | ||| || Sbjct 21635 ATACCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGTTCAACC 21576 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| || ||||| || | |||||||| || || ||||| Sbjct 21575 TCAAGAGTGATGGTCTTGCCCGTAAGGGTTTTTACGAAAATTTGCAT 21529 >seq4 Length=3596895 Score = 145 bits (160), Expect = 6e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||| || || || ||||| || ||||| ||||| || ||||| || | | || | Sbjct 3261284 AAACGCAATACCAAGTGAAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGGGTGCGT 3261225 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 | || |||||||||||||| || || |||||||| |||||||| || ||||||||||| Sbjct 3261224 CCGTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGAATGCCTTCC 3261165 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 ||||| || || || ||| ||| |||||| ||||| || | ||| ||||| | ||| Sbjct 3261164 TTATCCTGGATCTTGGCTTTGACATTTTCTATGGTGTCGGATGGTTCAACTTCCAAGGTG 3261105 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | ||||||||||| | || || || || || ||||| Sbjct 3261104 ATGGTTTTGCCGGTGAGGGTCTTCACGAAAATTTGCAT 3261067 Score = 143 bits (158), Expect = 2e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 || |||| ||||||||| | || ||||| || || ||||| ||||||| | || | Sbjct 3259614 AAGCGTAGAACTAAATGTAAAGTGGATTCCTTCTGAATATTATAATCGGACAGTGTGCGT 3259555 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 |||| ||||| || || || || || |||||||| |||||||| || || || ||||| Sbjct 3259554 CCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCC 3259495 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 |||||||||||||| ||| ||| | || | ||| || || | || || || | |||| Sbjct 3259494 TTATCTTGAATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGTG 3259435 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 | ||||| || || |||||||| || || ||||||||| Sbjct 3259434 ATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCATG 3259396 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||||| || ||||| || || ||||| || ||||||||||| |||| Sbjct 3261521 CCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGAC 3261462 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| || | ||||||||| || || |||| ||| |||||||| || ||| Sbjct 3261461 AAAGTTCGTCCATCCTCGAGTTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGA 3261402 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || ||||||||||| || |||||| | || | ||||| || | || ||| Sbjct 3261401 ATGCCCTCCTTATCTTGAATCTTAGCCTTTACATTCTCAATTGTGTCCGATGGCTCAACT 3261342 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||| | ||||||||||| | || || || || || ||||| Sbjct 3261341 TCCAAAGTAATAGTTTTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 3261295 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 ||||| || ||||| ||||| || || || ||||| |||| | || | | || ||| Sbjct 3259833 ACTAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCCTCC 3259774 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||||||||| || || |||| ||| |||||||| || ||||| || || || || ||| Sbjct 3259773 AATTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGAGGAATACCCTCCTTGTCCTGA 3259714 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||| || |||| | || || || | ||| || || ||||| | ||||| Sbjct 3259713 ATTTTGGCTTTAACGTTTTCAATTGTATCGGAAGGTTCAACCTCCAGAGTAATTGTTTTA 3259654 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| || || || ||||| Sbjct 3259653 CCCGTCAATGTTTTAACGAAGATTTGCAT 3259625 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||| || || || ||||| ||||| ||||| || || || ||||||| | || | Sbjct 3261056 AAACGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGA 3260997 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 | || ||||| |||||||| || || |||| ||| |||||||| || ||||||||||| Sbjct 3260996 CCGTCTTCCAACTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGAATGCCTTCC 3260937 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 |||||||| || || || || | || | || || || | || ||||| | ||| Sbjct 3260936 TTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACTTCCAAGGTG 3260877 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | |||||||| || | || || || || || ||||| Sbjct 3260876 ATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 3260839 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 ||||| || ||||| ||||| || || || ||||| || | | || | | || ||| Sbjct 3260061 ACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGTCCGTCCTCC 3260002 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||||||||| || || |||||||| |||||||| || || || || || |||||||| Sbjct 3260001 AATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTATCTTGG 3259942 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | || || || | || ||||| | ||| | |||||| Sbjct 3259941 ATCTTAGCCTTAACGTTCTCAATGGTATCTGAAGGCTCTACTTCCAAAGTAATAGTTTTG 3259882 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || || || || ||||| Sbjct 3259881 CCAGTCAGGGTCTTCACGAAGATTTGCAT 3259853 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 ||||| || ||||| ||||| || || || ||||| |||| | || | | || ||| Sbjct 3260819 ACTAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 3260760 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||||||||| || || |||||||| |||||||| || ||||| || || |||||||| Sbjct 3260759 AATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGTGGAATTCCCTCCTTATCTTGG 3260700 Query 101381 ATTTT 101385 || || Sbjct 3260699 ATCTT 3260695 >seq15 Length=2140121 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| | ||| | ||| || || || || || || ||||| || ||||| |||| Sbjct 600218 CCACCTCGAAGACGCAGAACCAAGTGGAGTGTTGACTCCTTTTGAATGTTGTAGTCGGAC 600277 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || ||||| || || || || |||||||||||||| || || || Sbjct 600278 AAGGTGCGACCATCTTCTAATTGTTTTCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGG 600337 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || ||||| ||||| ||||| ||| ||| |||| | |||||||| | || || Sbjct 600338 ATACCCTCTTTGTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACC 600397 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| || || || ||||| ||||| || || |||||||| Sbjct 600398 TCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 600444 >seq385 Length=177728 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 13761 CATAACCGTTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGA 13820 ||||||| |||||||| | || || |||||||| ||||| || ||||| ||||| | Sbjct 114267 CATAACCTTTGGGATCTCTGCCGTCTAAACTGTACTTGTCATTTAAATAAATGGCAGTTT 114326 Query 13821 TTAAAGCCACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCA 13880 || ||| || || || | |||||||| | ||| ||||| |||||||| | | | Sbjct 114327 CTAGCGCCTCTTCTGGTGAGTTGGACCATTCCAGTATCTTTTTTGCCCAATACTTACGAA 114386 Query 13881 TATATCCGTGCATTTTGCCTT 13901 | || ||||||||||||||| Sbjct 114387 GAAATGCGTGCATTTTGCCTT 114407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396103576582686