Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29]
36,198 sequences; 471,780,370 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq1401 120 2e-22
seq4 111 1e-19
seq138 98.7 8e-16
>seq1401
Length=52613
Score = 120 bits (132), Expect = 2e-22
Identities = 159/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 9082 TCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGA 9141
||||| || ||||||||||| | ||| || ||||| | || ||| || ||||||
Sbjct 48743 TCACAGATAAATTGAGCAATGCGGTCACCTCGTTTCACTTCGAAATCTTCATCTGAATGA 48802
Query 9142 TTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCCACG 9201
|| || | || || |||| |||||| | ||| || ||||| | || |||||||| ||
Sbjct 48803 TTAAATAATACAACGCCCAAGTTACCACGGTAGTCTTCATCTACGACTCCAGCACCAACA 48862
Query 9202 TCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGCATCCCACC 9261
|| || |||| ||| || |||||||||||||| || || | || ||||| | ||| |
Sbjct 48863 TCTATAAAGTTCTTAACAGCTAGTCCAGAGCGTGGTGCAACACGTCCGTAAGACCCCTCT 48922
Query 9262 GGTAATTGCACCCGCAAGTCGGTCATGACCAGCCCCTTGCC 9302
|| | ||| || |||| |||||| | || || |||| ||
Sbjct 48923 GGCACTTGTACTTGCAAATCGGTCTTCACTAGAGCCTTTCC 48963
>seq4
Length=3596895
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
|| ||||||| ||| || || |||||||| ||||| || || | || | || |||
Sbjct 3259605 ACTAAATGTAAAGTGGATTCCTTCTGAATATTATAATCGGACAGTGTGCGTCCATCCTCC 3259546
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
||||| || || || || |||| || |||||||| | ||| | || ||||| || |
Sbjct 3259545 AACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGA 3259486
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
|| || ||| ||| | | || || || | ||| ||||||| || || ||||||
Sbjct 3259485 ATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTT 3259426
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||||||||||||| || |||||||||||
Sbjct 3259425 CCCGTCAAAGTTTTGACGAAAATCTGCAT 3259397
Score = 98.7 bits (108), Expect = 8e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
|||| || | || || | ||||||||| || || || || || |||||||| || |
Sbjct 3261523 CGCCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGG 3261464
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
| | | |||| | || || | ||||||||||| || ||||| || |||||||| | |
Sbjct 3261463 ACAAAGTTCGTCCATCCTCGAGTTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTG 3261404
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
||| ||||||||| || |||||| |||||| | | | || || | ||| |
Sbjct 3261403 GAATGCCCTCCTTATCTTGAATCTTAGCCTTTACATTCTCAATTGTGTCCGATGGCTCAA 3261344
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
| |||| ||||| ||||| || || | || || || ||||| |||||
Sbjct 3261343 CTTCCAAAGTAATAGTTTTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 3261295
Score = 95.1 bits (104), Expect = 9e-15
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611
||||| ||||| || || || |||||| || || || ||||| || || | ||| ||
Sbjct 3261053 CGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGACCG 3260994
Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671
|| ||||||||||||||||| || ||||| || |||||||| | |||| ||| |||||
Sbjct 3260993 TCTTCCAACTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGAATGCCTTCCTTA 3260934
Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731
|| ||||| || || | | | ||||| | ||| || |||| || ||
Sbjct 3260933 TCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACTTCCAAGGTGATG 3260874
Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| || || | || || || || || |||||
Sbjct 3260873 GTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 3260839
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635
|| || || || ||||| || || | | || |||| ||||| ||||||||||| ||
Sbjct 3259815 TCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCCTCCAATTGCTTACCGGCGAAG 3259756
Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695
||||| || |||||||| | |||| ||||||||||| ||| || ||| ||
Sbjct 3259755 ATCAGACGTTGTTGATCTGGAGGAATACCCTCCTTGTCCTGAATTTTGGCTTTAACGTTT 3259696
Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755
| | | || || | || ||||||| ||||| ||||| |||||||| ||||| ||
Sbjct 3259695 TCAATTGTATCGGAAGGTTCAACCTCCAGAGTAATTGTTTTACCCGTCAATGTTTTAACG 3259636
Query 48756 AAAATCTGCAT 48766
|| || |||||
Sbjct 3259635 AAGATTTGCAT 3259625
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611
||||| ||||| || || || || |||||||| ||||| || || || | || ||
Sbjct 3261281 CGCAATACCAAGTGAAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGGGTGCGTCCG 3261222
Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671
|| ||||| ||||||||||| || |||| || |||||||| | ||||| ||| |||||
Sbjct 3261221 TCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGAATGCCTTCCTTA 3261162
Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731
|| ||||| ||| ||| | | | || || | || || |||| || ||
Sbjct 3261161 TCCTGGATCTTGGCTTTGACATTTTCTATGGTGTCGGATGGTTCAACTTCCAAGGTGATG 3261102
Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| || || | || || || ||||| |||||
Sbjct 3261101 GTTTTGCCGGTGAGGGTCTTCACGAAAATTTGCAT 3261067
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| || | ||| || | |||||||| || || ||| || || || |||||||| ||
Sbjct 3259396 GCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGA 3259337
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
| | || |||| |||| |||||||||||||| || | || |||||||| | |||
Sbjct 3259336 CAAGGTGCGTCCGTCTTCCAGTTGCTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGG 3259277
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
| || || ||||| |||||| ||| ||| | | || || || | || ||
Sbjct 3259276 GATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAAC 3259217
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| || || || || || ||||| || || || || || |||||
Sbjct 3259216 CTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 3259169
>seq138
Length=433312
Score = 98.7 bits (108), Expect = 8e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
|||| || || || || | || ||||||| ||| |||||| |||||||| || ||||
Sbjct 21757 CGCCACCTCTAAGACGAAGGACTAAATGTAACGTAGACTCTTTCTGAATATTATAGTCAG 21698
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
| | ||| | || |||||||| || |||||||| || || ||||||||||| | |
Sbjct 21697 CCAATGTGCGACCATCCTCCAACTGTTTTCCGGCAAAAATTAGACGCTGTTGATCTGGCG 21638
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
||| || ||||| || ||| || || ||| | | || || || | || |
Sbjct 21637 GAATACCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGTTCAA 21578
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| | || || || || ||||| | |||||||| ||||| |||||
Sbjct 21577 CCTCAAGAGTGATGGTCTTGCCCGTAAGGGTTTTTACGAAAATTTGCAT 21529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380769544377954
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |