Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1401 120 2e-22 seq4 111 1e-19 seq138 98.7 8e-16 >seq1401 Length=52613 Score = 120 bits (132), Expect = 2e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 9082 TCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGA 9141 ||||| || ||||||||||| | ||| || ||||| | || ||| || |||||| Sbjct 48743 TCACAGATAAATTGAGCAATGCGGTCACCTCGTTTCACTTCGAAATCTTCATCTGAATGA 48802 Query 9142 TTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCCACG 9201 || || | || || |||| |||||| | ||| || ||||| | || |||||||| || Sbjct 48803 TTAAATAATACAACGCCCAAGTTACCACGGTAGTCTTCATCTACGACTCCAGCACCAACA 48862 Query 9202 TCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGCATCCCACC 9261 || || |||| ||| || |||||||||||||| || || | || ||||| | ||| | Sbjct 48863 TCTATAAAGTTCTTAACAGCTAGTCCAGAGCGTGGTGCAACACGTCCGTAAGACCCCTCT 48922 Query 9262 GGTAATTGCACCCGCAAGTCGGTCATGACCAGCCCCTTGCC 9302 || | ||| || |||| |||||| | || || |||| || Sbjct 48923 GGCACTTGTACTTGCAAATCGGTCTTCACTAGAGCCTTTCC 48963 >seq4 Length=3596895 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||||| ||| || || |||||||| ||||| || || | || | || ||| Sbjct 3259605 ACTAAATGTAAAGTGGATTCCTTCTGAATATTATAATCGGACAGTGTGCGTCCATCCTCC 3259546 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 ||||| || || || || |||| || |||||||| | ||| | || ||||| || | Sbjct 3259545 AACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGA 3259486 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| ||| | | || || || | ||| ||||||| || || |||||| Sbjct 3259485 ATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTT 3259426 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||||||||| || ||||||||||| Sbjct 3259425 CCCGTCAAAGTTTTGACGAAAATCTGCAT 3259397 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || || | ||||||||| || || || || || |||||||| || | Sbjct 3261523 CGCCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGG 3261464 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | | | |||| | || || | ||||||||||| || ||||| || |||||||| | | Sbjct 3261463 ACAAAGTTCGTCCATCCTCGAGTTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTG 3261404 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| ||||||||| || |||||| |||||| | | | || || | ||| | Sbjct 3261403 GAATGCCCTCCTTATCTTGAATCTTAGCCTTTACATTCTCAATTGTGTCCGATGGCTCAA 3261344 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | |||| ||||| ||||| || || | || || || ||||| ||||| Sbjct 3261343 CTTCCAAAGTAATAGTTTTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 3261295 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 ||||| ||||| || || || |||||| || || || ||||| || || | ||| || Sbjct 3261053 CGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGACCG 3260994 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||||||||||||||| || ||||| || |||||||| | |||| ||| ||||| Sbjct 3260993 TCTTCCAACTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGAATGCCTTCCTTA 3260934 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||||| || || | | | ||||| | ||| || |||| || || Sbjct 3260933 TCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACTTCCAAGGTGATG 3260874 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || | || || || || || ||||| Sbjct 3260873 GTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 3260839 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || ||||| || || | | || |||| ||||| ||||||||||| || Sbjct 3259815 TCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCCTCCAATTGCTTACCGGCGAAG 3259756 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||| || |||||||| | |||| ||||||||||| ||| || ||| || Sbjct 3259755 ATCAGACGTTGTTGATCTGGAGGAATACCCTCCTTGTCCTGAATTTTGGCTTTAACGTTT 3259696 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | || ||||||| ||||| ||||| |||||||| ||||| || Sbjct 3259695 TCAATTGTATCGGAAGGTTCAACCTCCAGAGTAATTGTTTTACCCGTCAATGTTTTAACG 3259636 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 3259635 AAGATTTGCAT 3259625 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 ||||| ||||| || || || || |||||||| ||||| || || || | || || Sbjct 3261281 CGCAATACCAAGTGAAGAGTTGATTCCTTTTGAATGTTGTAGTCTGACAGGGTGCGTCCG 3261222 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||| ||||||||||| || |||| || |||||||| | ||||| ||| ||||| Sbjct 3261221 TCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGAATGCCTTCCTTA 3261162 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||||| ||| ||| | | | || || | || || |||| || || Sbjct 3261161 TCCTGGATCTTGGCTTTGACATTTTCTATGGTGTCGGATGGTTCAACTTCCAAGGTGATG 3261102 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || | || || || ||||| ||||| Sbjct 3261101 GTTTTGCCGGTGAGGGTCTTCACGAAAATTTGCAT 3261067 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || | ||| || | |||||||| || || ||| || || || |||||||| || Sbjct 3259396 GCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGA 3259337 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 | | || |||| |||| |||||||||||||| || | || |||||||| | ||| Sbjct 3259336 CAAGGTGCGTCCGTCTTCCAGTTGCTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGG 3259277 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | || || ||||| |||||| ||| ||| | | || || || | || || Sbjct 3259276 GATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAAC 3259217 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || ||||| || || || || || ||||| Sbjct 3259216 CTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 3259169 >seq138 Length=433312 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || || || || | || ||||||| ||| |||||| |||||||| || |||| Sbjct 21757 CGCCACCTCTAAGACGAAGGACTAAATGTAACGTAGACTCTTTCTGAATATTATAGTCAG 21698 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | | ||| | || |||||||| || |||||||| || || ||||||||||| | | Sbjct 21697 CCAATGTGCGACCATCCTCCAACTGTTTTCCGGCAAAAATTAGACGCTGTTGATCTGGCG 21638 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| || ||||| || ||| || || ||| | | || || || | || | Sbjct 21637 GAATACCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGTTCAA 21578 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| | || || || || ||||| | |||||||| ||||| ||||| Sbjct 21577 CCTCAAGAGTGATGGTCTTGCCCGTAAGGGTTTTTACGAAAATTTGCAT 21529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380769544377954