Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq15 100 2e-16 seq4 89.7 4e-13 >seq15 Length=2140121 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || || || ||||| ||||| ||||| ||||| ||| || || ||||| Sbjct 600445 AATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCTTC 600386 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || |||| |||||| ||||||||||| | ||| ||| || Sbjct 600385 TGACACCATCGAAAATGTCAAAGCTAAAATCCAAGACAAAGAGGGTATCCCCCCAGACCA 600326 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||| | | ||||| || || |||||||| |||||| | || || |||| || || Sbjct 600325 ACAGCGTTTGATCTTCGCCGGAAAACAATTAGAAGATGGTCGCACCTTGTCCGACTACAA 600266 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||||||| || || || || ||| |||| Sbjct 600265 CATTCAAAAGGAGTCAACACTCCACTTGGT 600236 >seq4 Length=3596895 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || || || | || || |||||||| ||| ||| || || ||| Sbjct 3260081 ATGCAAATCTTCGTGAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTAGAGCCCTCA 3260140 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||| || ||| || || |||||| | || ||||||| Sbjct 3260141 GATACCATTGAGAACGTTAAGGCTAAGATCCAAGATAAGGAGGGAATTCCACCAGATCAA 3260200 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | ||||| || |||||||| |||||||| || || ||||||||||| Sbjct 3260201 CAACGTTTGATCTTCGCCGGCAAACAGTTGGAAGACGGACGCACCCTGTCCGATTATAAC 3260260 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || || ||||| |||||||| ||| ||||||| Sbjct 3260261 ATCCAGAAAGAGTCTACTCTTCACTTGGTATT 3260292 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || || || | || || |||||||| ||| ||| || || ||| Sbjct 3260839 ATGCAAATCTTCGTGAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTAGAGCCCTCA 3260898 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||| || ||| || || || || | || ||||||| Sbjct 3260899 GATACCATTGAGAACGTTAAGGCTAAGATCCAAGATAAGGAAGGCATTCCACCAGATCAA 3260958 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || ||||| || || || || |||||||| | || || ||||||||||| Sbjct 3260959 CAACGTCTGATCTTCGCCGGTAAGCAGTTGGAAGACGGTCGCACCCTGTCCGATTATAAC 3261018 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || ||||| |||||||| ||| ||||||| | || || || || || Sbjct 3261019 ATCCAGAAAGAGTCTACTCTTCACTTGGTATTGCGTTTGCGTGGTGGTAT 3261068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425217127089042