Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29]
36,198 sequences; 471,780,370 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq11 114 7e-21
>seq11
Length=2963766
Score = 114 bits (126), Expect = 7e-21
Identities = 314/478 (66%), Gaps = 10/478 (2%)
Strand=Plus/Minus
Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992
|||||||| ||| || ||||||| || || || |||||||| || | ||||||||
Sbjct 1981976 CATAAATAGATCAGGTATCCACAGAGCGTAGAACAAATCTCTGGCGCGGTGCTCTTCTTT 1981917
Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052
||| || || || | ||| || || || || ||||| | ||||||||||| | ||
Sbjct 1981916 ACCGGTGTTTTTCTTCAAATCCAAAAATTCGAATATATCAGCATGCCATGGTTCCAGGTA 1981857
Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112
||| ||||| ||| | ||| || ||||||||||| || || | ||| | |||
Sbjct 1981856 GATGGCAAAGGCGCCTGGCCGTTTACCGCCACCTTGATCCACATAACGTGCTACATTATT 1981797
Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGA 26172
||| ||| || |||||| || || ||| | || || ||||||| |||| |
Sbjct 1981796 GAACACTCGCAGCATTGGCACCAAACCATTCGAGGTGCCATTTGTGCCCGCAATCGCAGT 1981737
Query 26173 TCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGC 26232
||| ||| | || || ||| | ||| || |||||||| ||||||||||
Sbjct 1981736 GCCTTTCGCGCGTATGCAATGTACATTTAGACCAATACCACCAGCAGATTTTGAAATCAA 1981677
Query 26233 TGCACA---ATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAA 26289
||||| || || | ||| |||||| || | ||| ||| | ||| |
Sbjct 1981676 AGCACATTGATGTGCAGATGT---GAAAATACCGTCAATGGAATCGTCCACCATGGTAAG 1981620
Query 26290 TAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGC 26349
||| || || || || ||||||| || | || | | | || | |||||| | |||
Sbjct 1981619 TAAGAAGCATGATGACAATTGCGGCTGTTTGGTGGCAGCAGCGAAGAGTGTCGGCGAAGC 1981560
Query 26350 ATGAGTATAATATCCTTC--ACTCAAAGCTGTATAAGTTTCAAGAACTTCATCGATAT 26405
||| ||| |||| | || | ||| ||||| ||||||| || |||||||||
Sbjct 1981559 ATGTGTAAAATAACGCTCGGAAAGCAAGTTGTAT--GTTTCAATTGCTGCATCGATAT 1981504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 252928368082850
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |