Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1 205 1e-47 seq4 113 7e-20 >seq1 Length=5074932 Score = 205 bits (226), Expect = 1e-47 Identities = 493/735 (67%), Gaps = 29/735 (4%) Strand=Plus/Plus Query 17989 ATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAA 18048 ||| || |||||||||| ||| | ||||| | | ||||||||||| | || | | Sbjct 4719476 ATCAGCCACAAATTCGATATAATCAGACATTAGTTTACAATTCATACCGATTAAATTAAC 4719535 Query 18049 AGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTAT 18108 || | ||| ||| | | ||||||| ||| || ||||| ||| ||||| | | Sbjct 4719536 CGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTGTAACAGCTTCTGAAATTATTTCAAC 4719595 Query 18109 TACCC-TAGATT--TTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAA 18165 | | | ||| |||| ||| | || | || || || || |||||| || || Sbjct 4719596 AATTCGTTCATTACTTGG---TTTTTGTATCAAATG-TTGGAACAT--TAAACATGCGAA 4719649 Query 18166 ATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCAT 18225 ||| |||| ||| ||||||| || |||| ||| ||| ||| || || || ||||| Sbjct 4719650 GTCACAATGTAGACCCTCATCTCGTGAGATTAGTTCATTAGAAAATGTCAAGCCAGGCAT 4719709 Query 18226 TATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTC 18285 || ||| | ||| || |||||||| ||||| || ||||| | | ||||| || || || Sbjct 4719710 TAAACCGCGTTTCTTAAGCCAAAAGATCGAAGCAAAACTGCCACTGAAGAAAATGCCTTC 4719769 Query 18286 AACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGT---ATTTATTGCTCAGTATCCA 18342 ||| || || || |||| | |||| |||| || | ||| | | ||||| Sbjct 4719770 AACAGCGGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTA--GAAGAA-ATCCA 4719826 Query 18343 TTTTTGTGCCCATTCT-CCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACA 18401 ||||||| || |||| || || || |||| ||||| || || | Sbjct 4719827 AGCAAGTGCCCAATCAGCCTTACGCTTTACCGCA-GGCATTGTCTCAATAGCGTTGAATA 4719885 Query 18402 AATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAG 18461 | | || | ||| ||| ||||| || ||||| || || ||||| | | ||||||||||| Sbjct 4719886 AGTAATTTCTTTGTTTCGAATCCTTAATATACGTATCAATTAATATACTATACATTTCAG 4719945 Query 18462 AATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAA 18521 |||| | |||||||||| || ||||| | ||| || | | ||||| | | ||| | Sbjct 4719946 AATGCACATTTTCCATAGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTAACTTGCA 4720005 Query 18522 --TC-TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGA 18578 || | ||| || | ||| || ||||| ||||| || ||||| |||| | |||| Sbjct 4720006 CTTCTTGGCT---GAAGCGTTCAACTAAATTTTCATTCACAATACCATCAGATGCGGCGA 4720062 Query 18579 AAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCAT 18638 | || || || || | | |||||||||| ||||||||| ||||| ||| |||| Sbjct 4720063 AGAAGGCTAACACGTGTGAAATGAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCAT 4720122 Query 18639 CTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGT 18698 | |||||||| || ||||| ||||| || |||||| || |||| ||| ||||| Sbjct 4720123 CCATATCTTTAGAAAGATCTACTTCCTCAACTGTCCAGAACGATGCTTCTGCCTG----- 4720177 Query 18699 ACATTTTATAAATAT 18713 || | ||||||||| Sbjct 4720178 -CAATATATAAATAT 4720191 >seq4 Length=3596895 Score = 113 bits (124), Expect = 7e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || | || || |||||||| || || || || | || || ||| Sbjct 3259166 AAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 3259225 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| |||| ||| || ||| ||| || ||||| |||||||| || || ||||| Sbjct 3259226 TCCGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGAT 3259285 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | || || | |||||||||||| || ||||| | || || || ||||| Sbjct 3259286 CAACAACGTTTAATCTTTGCCGGTAAGCAACTGGAAGACGGACGCACCTTGTCCGATTAC 3259345 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || || ||| | || |||||||| || Sbjct 3259346 AACATCCAGAAGGAGTCTACACTTCATTTGGT 3259377 Score = 109 bits (120), Expect = 8e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || ||| | || || ||||||||||| || ||||| || || Sbjct 3261295 ATGCAAATTTTCGTGAAGACACTCACCGGCAAAACTATTACTTTGGAAGTTGAGCCATCG 3261354 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||| || |||||||| || ||||| || ||||| ||| Sbjct 3261355 GACACAATTGAGAATGTAAAGGCTAAGATTCAAGATAAGGAGGGCATTCCACCAGATCAA 3261414 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | |||| | ||||||||||| ||||| ||| ||||||| || || || ||| Sbjct 3261415 CAACGTCTGATCTTCGCCGGTAAGCAACTCGAGGATGGACGAACTTTGTCCGACTACAAT 3261474 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 ||| || || |||| || ||||| ||| || Sbjct 3261475 ATACAGAAGGAATCGACACTCCATTTGGTGCTA 3261507 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| ||||| |||||||| || || || || || || ||| Sbjct 3259397 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 3259456 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || ||| |||||| |||||||| ||||| || || ||||| ||| Sbjct 3259457 GATACTATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 3259516 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| || || || ||| | || ||| | || | || ||||||||| Sbjct 3259517 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGATTATAAT 3259576 Query 156003 AT 156004 || Sbjct 3259577 AT 3259578 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || ||||||||||||| || ||||| ||||| | || || ||| ||| Sbjct 3259625 ATGCAAATCTTCGTTAAAACATTGACGGGTAAAACAATTACTCTGGAGGTTGAACCTTCC 3259684 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||| ||| ||||| || || || || || || |||||||| ||| Sbjct 3259685 GATACAATTGAAAACGTTAAAGCCAAAATTCAGGACAAGGAGGGTATTCCTCCAGATCAA 3259744 Query 155943 CAAAGATTGATTTATGCCGGTAAGCA 155968 ||| | |||| | ||||||||||| Sbjct 3259745 CAACGTCTGATCTTCGCCGGTAAGCA 3259770 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || | ||||| ||||| || || || ||||| || || Sbjct 3260839 ATGCAAATCTTCGTGAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTAGAGCCCTCA 3260898 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || ||| || |||||||| |||||||| || ||||| ||| Sbjct 3260899 GATACCATTGAGAACGTTAAGGCTAAGATCCAAGATAAGGAAGGCATTCCACCAGATCAA 3260958 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | |||| | |||||||||||| | ||||| | || | || |||||||| Sbjct 3260959 CAACGTCTGATCTTCGCCGGTAAGCAGTTGGAAGACGGTCGCACCCTGTCCGATTATAAC 3261018 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || |||||| | || ||||| || || || Sbjct 3261019 ATCCAGAAAGAGTCTACTCTTCACTTGGTATT 3261050 Score = 96.9 bits (106), Expect = 5e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || ||||||| ||||||||||| || ||||| || ||| Sbjct 3259853 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACTATTACTTTGGAAGTAGAGCCTTCA 3259912 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || ||| || |||||||| || || || || ||||| ||| Sbjct 3259913 GATACCATTGAGAACGTTAAGGCTAAGATCCAAGATAAGGAGGGAATCCCACCAGATCAA 3259972 Query 155943 CAAAGATTGATTTATGCCGGTAAGCA 155968 ||| | ||||| | ||||||||||| Sbjct 3259973 CAACGTTTGATCTTCGCCGGTAAGCA 3259998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731540846216800