Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1 248 2e-60 seq138 152 1e-31 seq4 149 1e-30 seq15 129 1e-24 >seq1 Length=5074932 Score = 248 bits (274), Expect = 2e-60 Identities = 475/703 (68%), Gaps = 15/703 (2%) Strand=Plus/Plus Query 49655 ATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTTAAA 49714 ||| || |||||||| | ||| | ||||||| || |||||||||||| | ||| |||| Sbjct 4719476 ATCAGCCACAAATTCGATATAATCAGACATTAGTTTACAATTCATACCGATTAAATTAAC 4719535 Query 49715 TGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatc---at 49771 || || || ||| | ||||||| || ||| ||||||| | |||||| | Sbjct 4719536 CGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTGTAACAGCTTCTGAAATTATTTCAAC 4719595 Query 49772 aattatattattttttgataatttatatttaatatgattcgcatatattaaACATGCAAA 49831 |||| | ||| ||| | ||| ||| ||| | | | | ||||||||||| || Sbjct 4719596 AATTCGTTCATTACTTGGTT-TTTGTATCAAATGTT----GGA-ACATTAAACATGCGAA 4719649 Query 49832 ATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCAT 49891 ||| ||||| |||||| || | || || | ||||||| ||| || || || ||||| Sbjct 4719650 GTCACAATGTAGACCCTCATCTCGTGAGATTAGTTCATTAGAAAATGTCAAGCCAGGCAT 4719709 Query 49892 TAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTC 49951 ||| || | || ||||||||||| || || |||||||| | | ||||| || || || Sbjct 4719710 TAAACCGCGTTTCTTAAGCCAAAAGATCGAAGCAAAACTGCCACTGAAGAAAATGCCTTC 4719769 Query 49952 GACACACGCAAATGCTATTATTCTTGCTCCAAACATTA---ATTTATCATCTAATATCCA 50008 ||| |||||||| |||| | | | ||||| | | ||| | | ||||| Sbjct 4719770 AACAGCGGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTAGAAG---AAATCCA 4719826 Query 50009 ATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 50068 | | |||||||| || || || | | ||| || | || ||||| || ||||| Sbjct 4719827 AGCAAGTGCCCAATCAGCCTTACGCTTTACCGCAGGCATTGTCTCAATAGCGTTGAATAA 4719886 Query 50069 TTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCAGA 50128 | |||| ||| | ||||||| | |||||||||||| Sbjct 4719887 GTAATTTCTTTGTTTCGAATCCTTAATATACGTATCAATTAATATACTATACATTTCAGA 4719946 Query 50129 ATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGAAC 50188 ||| ||| ||||||||| ||||||||| ||| || | ||| |||| | || || Sbjct 4719947 ATGCACATTTTCCATAGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTAACTTGCAC 4720006 Query 50189 TTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAA 50248 ||| ||| |||||||||||||| ||| ||||||||||||||||| |||||||| Sbjct 4720007 TTCTTGGCTGAAGCGTTCAACTAAATTTTCATTCACAATACCATCAGATGCGGCGAAGAA 4720066 Query 50249 TGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAG 50308 ||||| |||| | ||| |||||| ||||||||| | | | | ||||| || | Sbjct 4720067 GGCTAACACGTGTGAAATGAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCCAT 4720126 Query 50309 ATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCT 50351 ||| || || | ||||||||| || | |||||| || |||||| Sbjct 4720127 ATCTTTAGAAAGATCTACTTCCTCAACTGTCCAGAACGATGCT 4720169 >seq138 Length=433312 Score = 152 bits (168), Expect = 1e-31 Identities = 173/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 |||||||||||||| | ||||||||||| |||| |||||| |||||||| |||| Sbjct 21755 CCACCTCTAAGACGAAGGACTAAATGTAACGTAGACTCTTTCTGAATATTATAGTCAGCC 21696 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 ||||| || |||| ||||| ||||| || ||||| |||| | ||||||||| || || Sbjct 21695 AATGTGCGACCATCCTCCAACTGTTTTCCGGCAAAAATTAGACGCTGTTGATCTGGCGGA 21636 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTT--ATAGAATCTGACGATTCTA 192487 || ||||| |||||||| ||||| || |||| ||| |||| ||| || | ||| | Sbjct 21635 ATACCTTCCTTATCTTGAATTTTGGCCTTAACAT--GTTCAATAGTATCCGAAGGTTCAA 21578 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | || ||||| ||||| || || || | ||||| | || || |||||| Sbjct 21577 CCTCAAGAGTGATGGTCTTGCCCGTAAGGGTTTTTACGAAAATTTGCATT 21528 >seq4 Length=3596895 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | | |||| |||||||||||||| | || || ||||||||||| Sbjct 3259626 ATACCACCACGCAAGCGTAGAACTAAATGTAAAGTGGATTCCTTCTGAATATTATAATCG 3259567 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| ||| |||| ||||| ||||| ||||| || || || | |||||||| || Sbjct 3259566 GACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGG 3259507 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| |||||||| |||||| ||| ||||| |||| ||| || | || Sbjct 3259506 GGGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCA 3259447 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| |||||||| || || || ||||| | || |||||||| Sbjct 3259446 ACCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 3259397 Score = 141 bits (156), Expect = 2e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || ||||| | |||| ||| || ||| || ||||| Sbjct 3259398 ATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCG 3259339 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || ||| | || |||| ||| ||||| ||||||||||| | |||||||| || Sbjct 3259338 GACAAGGTGCGTCCGTCTTCCAGTTGCTTACCGGCAAAGATTAAACGTTGTTGATCTGGG 3259279 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| || ||| ||| ||||| |||| ||| || | ||| Sbjct 3259278 GGGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 3259219 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || ||||| ||||| || ||||| || || || | || || |||||||| Sbjct 3259218 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 3259166 >seq15 Length=2140121 Score = 129 bits (142), Expect = 1e-24 Identities = 174/240 (73%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATA 192357 ||| ||| |||||||||| |||||| | || || || | || | ||| ||| || || Sbjct 600207 GTTCAATGATACCACCTCGAAGACGCAGAACCAAGTGGAGTGTTGACTCCTTTTGA-ATG 600265 Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417 || || || || || || || |||| || |||||||| || || ||||| || | |||| Sbjct 600266 TTGTAGTCGGACAAGGTGCGACCATCTTCTAATTGTTTTCCGGCGAAGATCAAACGCTGT 600325 Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT 192477 || || || || || || ||||| ||||| |||||| ||| ||||| || | || Sbjct 600326 TGGTCTGGGGGGATACCCTCTTTGTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCA 600385 Query 192478 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || | || || |||| || ||||| ||||||||||| ||||| | || ||||||||| Sbjct 600386 GAAGGCTCGACCTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATT 600445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984023411097300