Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1 196 9e-45 seq4 149 1e-30 seq138 143 5e-29 seq15 120 5e-22 >seq1 Length=5074932 Score = 196 bits (216), Expect = 9e-45 Identities = 460/703 (65%), Gaps = 15/703 (2%) Strand=Plus/Plus Query 38957 ATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATTTAAA 39016 ||| ||||||||||| | ||| | |||||| || |||||||||||| | ||| |||| Sbjct 4719476 ATCAGCCACAAATTCGATATAATCAGACATTAGTTTACAATTCATACCGATTAAATTAAC 4719535 Query 39017 TGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatc---at 39073 || || || ||| | ||||||| || ||| ||||||| | |||||| | Sbjct 4719536 CGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTGTAACAGCTTCTGAAATTATTTCAAC 4719595 Query 39074 aattatattattttttgataatttatatttaatatgattcgcatataGTAAACATGCAAA 39133 |||| | ||| ||| | ||| ||| ||| | | | | || ||||||||| || Sbjct 4719596 AATTCGTTCATTACTTGGTT-TTTGTATCAAATGT---TGGAACAT--TAAACATGCGAA 4719649 Query 39134 ATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCAT 39193 || ||||| ||| || || | || || | ||||||| ||| || || || ||||| Sbjct 4719650 GTCACAATGTAGACCCTCATCTCGTGAGATTAGTTCATTAGAAAATGTCAAGCCAGGCAT 4719709 Query 39194 TAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTC 39253 ||| || | || ||||||||||| || || |||||||| | | ||||| || || || Sbjct 4719710 TAAACCGCGTTTCTTAAGCCAAAAGATCGAAGCAAAACTGCCACTGAAGAAAATGCCTTC 4719769 Query 39254 CACACACGCAAATGCTATTATTCTTGCTCCAAACATTA---ATTTATCATCTAAAATCCA 39310 ||| |||||||| |||| | | | ||||| | | ||| | ||||||| Sbjct 4719770 AACAGCGGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTAGAAG---AAATCCA 4719826 Query 39311 ATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 39370 | | |||||||| || || || | | ||| || | || ||||| || ||||| Sbjct 4719827 AGCAAGTGCCCAATCAGCCTTACGCTTTACCGCAGGCATTGTCTCAATAGCGTTGAATAA 4719886 Query 39371 TTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTTCAGA 39430 | || | |||||||||||| Sbjct 4719887 GTAATTTCTTTGTTTCGAATCCTTAATATACGTATCAATTAATATACTATACATTTCAGA 4719946 Query 39431 ATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACTGAAC 39490 ||| ||| ||||||||| ||||||||| ||| || | ||| |||| | || || Sbjct 4719947 ATGCACATTTTCCATAGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTAACTTGCAC 4720006 Query 39491 TTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAA 39550 ||| ||| |||||||||||||| ||| ||||||||||||||||| |||||||| Sbjct 4720007 TTCTTGGCTGAAGCGTTCAACTAAATTTTCATTCACAATACCATCAGATGCGGCGAAGAA 4720066 Query 39551 TGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAG 39610 ||||| || | | ||| |||||| ||||||||| | | | | ||||| || | Sbjct 4720067 GGCTAACACGTGTGAAATGAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCCAT 4720126 Query 39611 ATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCT 39653 ||| || || | ||||||||| || | |||||| || |||||| Sbjct 4720127 ATCTTTAGAAAGATCTACTTCCTCAACTGTCCAGAACGATGCT 4720169 >seq4 Length=3596895 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | | |||| |||||||||||||| | || || |||||||||||| Sbjct 3259626 ATACCACCACGCAAGCGTAGAACTAAATGTAAAGTGGATTCCTTCTGAATATTATAATCG 3259567 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || ||||| ||||| ||||| ||||| || | ||||| || || Sbjct 3259566 GACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGG 3259507 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| |||||| ||| ||||| |||||||| || | || Sbjct 3259506 GGGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCA 3259447 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAt 172069 || || | ||| |||||||| || || || ||||| | ||| |||||||| Sbjct 3259446 ACCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 3259397 Score = 132 bits (146), Expect = 9e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || ||||| | |||| ||| || || || ||||| Sbjct 3259398 ATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCG 3259339 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| |||| |||| ||| ||||| ||||| ||||| | ||||| || || Sbjct 3259338 GACAAGGTGCGTCCGTCTTCCAGTTGCTTACCGGCAAAGATTAAACGTTGTTGATCTGGG 3259279 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| || ||| ||| ||||| |||||||| || | ||| Sbjct 3259278 GGGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 3259219 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAtttt 172072 || || ||||| ||||| || ||||| || || || | ||| || |||||||| Sbjct 3259218 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 3259166 >seq138 Length=433312 Score = 143 bits (158), Expect = 5e-29 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||||||||| || | ||||||||||| |||| |||||| ||||||||| || | Sbjct 21755 CCACCTCTAAGACGAAGGACTAAATGTAACGTAGACTCTTTCTGAATATTATAGTCAGCC 21696 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || | || ||||| ||||| || |||||||||| | |||||| || || || Sbjct 21695 AATGTGCGACCATCCTCCAACTGTTTTCCGGCAAAAATTAGACGCTGTTGATCTGGCGGA 21636 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTT--ATAGTATCTGACGATTCTA 172020 || ||||| |||||||| ||||| || |||| ||| |||||||| || | ||| | Sbjct 21635 ATACCTTCCTTATCTTGAATTTTGGCCTTAACAT--GTTCAATAGTATCCGAAGGTTCAA 21578 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAtt 172070 | || ||||| ||||| || || || | ||||| | ||| || |||||| Sbjct 21577 CCTCAAGAGTGATGGTCTTGCCCGTAAGGGTTTTTACGAAAATTTGCATT 21528 >seq15 Length=2140121 Score = 120 bits (132), Expect = 5e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || |||||||||| ||| || | || || || | || | ||| || ||| || || Sbjct 600212 ATGATACCACCTCGAAGACGCAGAACCAAGTGGAGTGTTGACTCCTTTTGAATGTTGTAG 600271 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || || | || | || || |||||||| || || || || || | ||||||||| Sbjct 600272 TCGGACAAGGTGCGACCATCTTCTAATTGTTTTCCGGCGAAGATCAAACGCTGTTGGTCT 600331 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || || || ||||| ||||| |||||| ||| ||||| || || || || | Sbjct 600332 GGGGGGATACCCTCTTTGTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGC 600391 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAtt 172070 || || |||| || ||||| ||||||||||| ||||| | ||| ||||||||| Sbjct 600392 TCGACCTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATT 600445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904726448588400