Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq160 136 1e-26 seq10614 127 6e-24 seq49 123 7e-23 seq172 87.8 5e-12 >seq160 Length=384457 Score = 136 bits (150), Expect = 1e-26 Identities = 206/293 (70%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 ||||||||||| ||||| || ||||| ||| | || ||||| |||||||| || || Sbjct 55925 TTGATTAAACGCCGCTGTATGTAACCCGTTTCTGCAGTCTTTACGGCTGTATCGATAAGT 55866 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAG 302703 || |||| |||||||| ||||| ||| | | ||| ||| ||| || | | | Sbjct 55865 CCTTCACGTCCACCCATTGCATGAAAGTAGAACTCACTTGGTGTTAGGCCTGCTAGGTAT 55806 Query 302704 GAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGG 302763 || |||| || || || |||||||| || || ||| |||| |||||||||||| Sbjct 55805 GAATTCTCGACAAAGCCGCGCGCCTCTGGACCATAATCGTCCTTGATAAAGTGTGGCATT 55746 Query 302764 GTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCAC 302823 || | || | | |||||||| ||||| || || || ||||||||||| || | ||| Sbjct 55745 GTACGTTTACGAAAACCGTATGGTATACGTTTACCTTCGACGTTCTGCTGCCCAACGCAG 55686 Query 302824 GAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 | ||| | || || || || | | | |||||||| ||||| ||||||| Sbjct 55685 GCAATTACTTGGGATATGTTGATGTTAGAACCCTTGGAACCAGCGATTACCAT 55633 Score = 87.8 bits (96), Expect = 5e-12 Identities = 117/161 (73%), Gaps = 9/161 (6%) Strand=Plus/Minus Query 303628 TGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTCC 303687 || || | |||||||||||| |||||||| || ||||| ||||| || ||| || Sbjct 53731 TGAGGTACATGTAAATTCATTTCATCACCATCGAAATCTGCATTGTATGGCGAGGTACAA 53672 Query 303688 GCAACGTTCATCCGGAAAGT--ATC-ACCCTGCATCATAACACGGGCTTTATGACACATC 303744 | || |||||||||||| || | | | | ||| | ||||| ||||| |||| Sbjct 53671 GAAAGGTTCATCCGGAATGTGGACCAAGGCAGCACTTTGACACG------ATGACCCATC 53618 Query 303745 ATAGACATTCTGTGTAGAGTTGGCTGACGATTGAAAAGCAC 303785 || |||||| |||| || |||||||||||||| || | ||| Sbjct 53617 ATCGACATTTTGTGCAGCGTTGGCTGACGATTAAATATCAC 53577 Score = 86.0 bits (94), Expect = 2e-11 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 ||| ||||||||||| |||||||||||| | | || | ||| || | ||| | || Sbjct 43036 GGCAATAAGACCACAGAAATTACACACATGTATACGATATGGATCGGAAACCTCAAAGAG 42977 Query 251463 CCGACC-CTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCAC 251521 || | | | | || | | || || || || ||| |||||| |||||||| |||| Sbjct 42976 ACGTTCGCGTAGA-AATTGTGCAGCTCCATGAGATATCTGACAATCTCGCTCCATCTCAC 42918 Query 251522 CGAAACGAAGACCACCATCGCGAGCCCTACCCTC 251555 ||||||| ||||| |||||||| ||||||||||| Sbjct 42917 CGAAACGTAGACCTCCATCGCGTGCCCTACCCTC 42884 >seq10614 Length=4776 Score = 127 bits (140), Expect = 6e-24 Identities = 193/272 (71%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | |||||| ||||| || |||||| | || || ||||| ||| Sbjct 3993 TCCATAGCCTTTATGAGACGACGTTGAATGTACCCAGTTTCTGCAGTCTTGACAGCAGTA 3934 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| |||||||||||||||| |||||| | | ||| ||| || || Sbjct 3933 TCGATAAGACCTTCACGACCACCCATAGCGTGGAAGTAGAACTCGGAAGGTGTTAAGCCG 3874 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 ||| | | || |||| ||||| ||||||| ||| || || ||||||| || | Sbjct 3873 GCAAGATACGAATTCTCCACGAAGCCACGCGACTCAGGACCGTAATCGTC---TTTAATG 3817 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || ||||||| || | || | |||||||| ||||| || || ||||||||||| Sbjct 3816 AAATGTGGCAATGTGCGCTTACGGAAACCGTATGGTATACGTTTACCCTCAACGTTCTGT 3757 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || |||| || | ||| | ||| || ||||| Sbjct 3756 TGGCCCACACAAGCAATAACCTGTGAGATATT 3725 >seq49 Length=1075794 Score = 123 bits (136), Expect = 7e-23 Identities = 235/337 (70%), Gaps = 12/337 (4%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||| || |||||||||||||| || | | ||| |||| || || ||| || || | | Sbjct 750016 CCAACCGCGTCAATTTCGTCAATAAACAAAATACAGGGAGCATGTTTTCTAGCCATCGTA 749957 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | |||| ||||| || | || | ||||||| |||| || | ||| || || || Sbjct 749956 AACATATCTCGAACACGTGACGGACCTACACCAACAAACATCTCCAGAAACTCGGATCCG 749897 Query 289150 GATAC--TTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 ||||| || || || | ||||| ||||| || || |||| | || | | || | Sbjct 749896 GATACGCTTAAA--AAAGGAACATTCGCTTCACCAGCGGTTGCCTTTGCTAACAACGTTT 749839 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAA-TAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGA 289265 | || ||||||||||| ||| ||| | | | || ||||||| |||||| || || | Sbjct 749838 TTCCAGTTCCAGGTGG-ACCTGTAAGCATAGCACCTTTTGGTATTTTTGCGCCGAGGTCA 749780 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 |||||| | || | ||||| || | |||| |||| || ||| |||||| || Sbjct 749779 -ATATATTGTTGCGGATTTTTTAAGAAGTTCACAAATTCCATAATTTCGATTTTTGCTTC 749721 Query 289326 ATCACATCCTGCTACAT--CAGCAAAAGT--AATATT 289358 ||||| ||||| |||| | |||||||| |||||| Sbjct 749720 CTCACAACCTGCAACATCCCTGCAAAAGTGCAATATT 749684 >seq172 Length=357573 Score = 87.8 bits (96), Expect = 5e-12 Identities = 124/170 (73%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||| | | ||||| ||||| || ||||||||||| | ||||| |||||| || | Sbjct 252082 GCACCATATGAAATCAAGCAATCCCGCTCCATTTCACCTAAACGCAAACCACCTTC--TC 252025 Query 233333 GAC--CTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAAT 233390 ||| | ||| || | |||||| |||| || | ||||||| | ||||| || Sbjct 252024 GACTGCGACCTTGTGTGGGTTGACGCGTTAGCACCGCCTTTGGACCGCGTGCACGCGCAT 251965 Query 233391 TAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACAC-GGACC 233439 |||||||||| ||||||||||||||| || ||||| |||| ||||| Sbjct 251964 GCATTTTATCTTGCACCATATGCTTCAGTTTCTGATAAT-ACACTGGACC 251916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471134990314726