Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq206 129 5e-25 seq4 91.5 1e-13 >seq206 Length=307991 Score = 129 bits (142), Expect = 5e-25 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 ||||| || | || ||||| ||||||| ||||| || || ||||| |||||||| || Sbjct 262634 TTGTAGTCAAATTGTGTTTGAGCGCCCAATTCGCAGCCAAAATACTTGGTCGGGTAGGTG 262693 Query 34492 GCCGGACGTCCAA--GCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGC 34549 ||||||||||| | |||| | || | ||||| ||| || || || || || ||||||| Sbjct 262694 GCCGGACGTCCGATGGCGCGT--GCCACTTCGGCCATATTAACAATAACGGTTTTGATGC 262751 Query 34550 CGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGT 34609 |||| || || || |||||||| || | ||| |||||||| || |||||||| || Sbjct 262752 CGTTACCTTTGCCCTCGACCTTAGCTTGCAAGCGTGGCATTTTATAACGGTAGAAAATGT 262811 Query 34610 CCGCCACATTGCGGTTAACGTTCACAGTCCCCAT 34643 | | ||||| || || || || || | ||||| Sbjct 262812 CGGTGACATTACGATTCACATTAACGGAACCCAT 262845 Score = 120 bits (132), Expect = 3e-22 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 34255 CCGTGATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATG 34314 || ||| | ||||| |||||||| | || | || | | || ||||| || ||| | Sbjct 262394 CCATGAAAGCCGCAAGCTTTGCATGCTTGCGAAATGGTTTGATTCTTAGCCGAGACGGTT 262453 Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 | || |||||||| ||||| |||||||| || || || || ||||| ||||||||||| Sbjct 262454 AAATCGGTCTCCGGATTGTCGCATTCCGGGCATAAGACGAATTTGCGTATGAAACCATCG 262513 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430 ||||| ||||| || || ||| ||||| ||||| || |||||||| ||||| || Sbjct 262514 AGCAGATCCTGCAATTTGCCGGCATCGTGCGAGCCATTTACGATGAAACGTTCATT 262569 >seq4 Length=3596895 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||||||||| || || |||||||| || | || |||||| | Sbjct 3259397 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 3259456 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || ||| || ||| || || ||||| | ||| |||||| Sbjct 3259457 GATACTATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 3259516 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | |||| || || |||||| ||||||||| | ||| || | ||||| || Sbjct 3259517 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGATTATAAT 3259576 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 ||||| || ||||| || || || Sbjct 3259577 ATTCAGAAGGAATCCACTTTACA 3259599 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| || || || || || || ||||| ||||| || | || || || Sbjct 3259166 AAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 3259225 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||||||| | | | || ||| |||||| ||||||||||| | ||| ||| Sbjct 3259226 TCCGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGAT 3259285 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | | || | ||| ||||| || ||||| || | | || || | |||||| Sbjct 3259286 CAACAACGTTTAATCTTTGCCGGTAAGCAACTGGAAGACGGACGCACCTTGTCCGATTAC 3259345 Query 110450 AACATTCAAAAAGAATCTAC 110469 ||||| || || || ||||| Sbjct 3259346 AACATCCAGAAGGAGTCTAC 3259365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412659469509614