Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq15 114 8e-21 seq4 104 2e-17 >seq15 Length=2140121 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | || |||||| |||||||| ||||| || | | |||| |||| Sbjct 600232 CAGAACCAAGTGGAGTGTTGACTCCTTTTGAATGTTGTAGTCGGACAAGGTGCGACCATC 600291 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || | ||| |||||||||||||||| || || |||||| | || | ||||| ||||| Sbjct 600292 TTCTAATTGTTTTCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGGATACCCTCTTTGTC 600351 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| |||||| | | || | ||| | |||||| || | ||| ||||| Sbjct 600352 TTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTGATGGT 600411 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | ||| || || || |||||||| Sbjct 600412 CTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 600444 >seq4 Length=3596895 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || | ||| | || |||| ||||| || ||| ||||| |||||||| || || Sbjct 3261065 CCACCACGCAAACGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGAC 3261006 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| | || |||| ||||| |||||||||||||| ||||| || ||| | || Sbjct 3261005 AGGGTGCGACCGTCTTCCAACTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGA 3260946 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || ||||| || | || || || ||| | || | || || ||| || Sbjct 3260945 ATGCCTTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACT 3260886 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| ||||| || || ||||||||||| || ||||| ||||| Sbjct 3260885 TCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 3260839 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || | ||| | || |||| ||||| || ||||| |||||||| ||||| || Sbjct 3261293 CCACCACGCAAACGCAATACCAAGTGAAGAGTTGATTCCTTTTGAATGTTGTAGTCTGAC 3261234 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| | || |||| |||||| ||||||||||||| ||||| || ||| | || Sbjct 3261233 AGGGTGCGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGA 3261174 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || ||||| || | || || |||||| | |||| | || | || || Sbjct 3261173 ATGCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCTATGGTGTCGGATGGTTCAACT 3261114 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| ||||| || || ||||||||||| || || || ||||| Sbjct 3261113 TCCAAGGTGATGGTTTTGCCGGTGAGGGTCTTCACGAAAATTTGCAT 3261067 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| || ||| ||||| |||||||| || || ||| |||| | || ||| Sbjct 3260289 ACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGTCCGTCTTCC 3260230 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 | || || ||||||||||||| ||||| || ||| | || | |||||||| || | Sbjct 3260229 AACTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGAATTCCCTCCTTATCTTGG 3260170 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || || ||| | || | || || ||| || || | ||| ||||| || Sbjct 3260169 ATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACTTCCAAGGTGATGGTTTTG 3260110 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||||||||| || ||||| ||||| Sbjct 3260109 CCAGTGAGGGTCTTCACGAAGATTTGCAT 3260081 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| | ||| | ||| |||||||||||||| ||||| || ||| |||| | || Sbjct 3260064 AGGACTAAGTGGAGGGTTGATTCCTTCTGAATGTTGTAGTCTGACAGGGTGCGTCCGTCC 3260005 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||| ||||||||||||| ||||| || ||| | || | |||||||| || Sbjct 3260004 TCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTATCT 3259945 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || | ||| || || | || || || Sbjct 3259944 TGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAAGGCTCTACTTCCAAAGTAATAGTT 3259885 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| || ||||| ||||| Sbjct 3259884 TTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 3259853 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| | ||| | ||| |||||||| ||||| ||||| || | | | || | || Sbjct 3259836 AGGACTAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCC 3259777 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||| |||||||||||||| ||||| || ||| | || | ||||||||||| Sbjct 3259776 TCCAATTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGAGGAATACCCTCCTTGTCC 3259717 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| ||| ||| | | || | || | || || || | || || || Sbjct 3259716 TGAATTTTGGCTTTAACGTTTTCAATTGTATCGGAAGGTTCAACCTCCAGAGTAATTGTT 3259657 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| | || || || ||||| ||||| Sbjct 3259656 TTACCCGTCAATGTTTTAACGAAGATTTGCAT 3259625 Score = 84.2 bits (92), Expect = 1e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| | ||| | ||| |||||||| ||||| ||||| || ||| |||| | || Sbjct 3260822 AGGACTAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCC 3260763 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| |||||| ||||||||||||| ||||| || ||| | || | |||||||| || Sbjct 3260762 TCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGTGGAATTCCCTCCTTATC 3260704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325549116346562