Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq4 127 3e-24 >seq4 Length=3596895 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| || || |||||||| || ||| | || || || | | || Sbjct 3259398 TGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCCG 3259457 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| ||| |||||| ||| ||| ||||| || || || ||||||| Sbjct 3259458 ATACTATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAAC 3259517 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | ||||| || || ||||| || || ||| | || | | |||||||||| Sbjct 3259518 AACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGATTATAATA 3259577 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || || ||||| ||| | |||||||| |||| || | || |||| Sbjct 3259578 TTCAGAAGGAATCCACTTTACATTTAGTTCTACGCTTGCGTGGTGGTA 3259625 Score = 116 bits (128), Expect = 6e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || ||| | || || ||||| |||||| | || || || | | Sbjct 3261296 TGCAAATTTTCGTGAAGACACTCACCGGCAAAACTATTACTTTGGAAGTTGAGCCATCGG 3261355 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | |||||||| ||| || ||| ||| || ||||||||||| ||||||| Sbjct 3261356 ACACAATTGAGAATGTAAAGGCTAAGATTCAAGATAAGGAGGGCATTCCACCAGATCAAC 3261415 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || || || || ||||| ||| | || ||| |||| || | || || |||| Sbjct 3261416 AACGTCTGATCTTCGCCGGTAAGCAACTCGAGGATGGACGAACTTTGTCCGACTACAATA 3261475 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 |||| || |||||||| ||||||| || |||| Sbjct 3261476 TACAGAAGGAATCGACACTCCATTTGGTGCTACG 3261509 Score = 109 bits (120), Expect = 9e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | |||||||| || || |||||||||||| | || || |||| | || Sbjct 3259626 TGCAAATCTTCGTTAAAACATTGACGGGTAAAACAATTACTCTGGAGGTTGAACCTTCCG 3259685 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||| || ||| ||||| || || || || ||||| || ||||||| Sbjct 3259686 ATACAATTGAAAACGTTAAAGCCAAAATTCAGGACAAGGAGGGTATTCCTCCAGATCAAC 3259745 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || || || || ||||| ||||| || || | || || | || || || | Sbjct 3259746 AACGTCTGATCTTCGCCGGTAAGCAATTGGAGGACGGACGTACCTTGTCCGACTACAACA 3259805 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || || ||||| || |||| ||||| Sbjct 3259806 TCCAGAAGGAATCAACCCTCCACTTAGT 3259833 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || || ||||| || || | || ||||| | | Sbjct 3260840 TGCAAATCTTCGTGAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTAGAGCCCTCAG 3260899 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | || || || ||| || ||| ||| |||||||||||||| ||||||| Sbjct 3260900 ATACCATTGAGAACGTTAAGGCTAAGATCCAAGATAAGGAAGGCATTCCACCAGATCAAC 3260959 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || || || || ||||| || || || || | | || | | |||||||| | Sbjct 3260960 AACGTCTGATCTTCGCCGGTAAGCAGTTGGAAGACGGTCGCACCCTGTCCGATTATAACA 3261019 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || ||||| || ||| | || || ||||| || || | || |||| Sbjct 3261020 TCCAGAAAGAGTCTACTCTTCACTTGGTATTGCGTTTGCGTGGTGGTA 3261067 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || || ||||| || || | || || |||| || Sbjct 3261068 TGCAAATTTTCGTGAAGACCCTCACCGGCAAAACCATCACCTTGGAAGTTGAACCATCCG 3261127 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| ||| || || || ||| ||||||||||| || ||||||| Sbjct 3261128 ACACCATAGAAAATGTCAAAGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGATCAAC 3261187 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || ||||| ||||| || || | || | |||| || || | Sbjct 3261188 AACGTTTGATCTTCGCCGGTAAGCAATTGGAGGACGGACGCACCCTGTCAGACTACAACA 3261247 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||| ||| | || || ||||| || || | || |||| Sbjct 3261248 TTCAAAAGGAATCAACTCTTCACTTGGTATTGCGTTTGCGTGGTGGTA 3261295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785810679358160