Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq4 141 9e-29 seq11 140 3e-28 seq138 98.7 1e-15 seq75 84.2 2e-11 >seq4 Length=3596895 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || |||| ||| | ||| ||||||| |||||| || || || |||||||||||| Sbjct 3259396 GCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGA 3259337 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| |||||| ||||| ||||| ||| |||| | |||||| ||||| || || Sbjct 3259336 CAAGGTGCGTCCGTCTTCCAGTTGCTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGG 3259277 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||||||||| ||| || ||| | | ||| | || || | ||||| || Sbjct 3259276 GATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAAC 3259217 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | |||||||| ||||| || || ||||| |||||||| Sbjct 3259216 CTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 3259169 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| || | ||| | || ||||| | ||| ||||| || ||||| ||||| ||| Sbjct 3261522 GCCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGA 3261463 Query 137244 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 || || | || | || |||||||| ||||| || ||||||||||||| ||||| || | Sbjct 3261462 CAAAGTTCGTCCA-TCCTCGAGTTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTG 3261404 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | ||||| || || || ||| || |||| | || | ||||| | || || | Sbjct 3261403 GAATGCCCTCCTTATCTTGAATCTTAGCCTTTACATTCTCAATTGTGTCCGATGGCTCAA 3261344 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| | ||| | || |||||||| | ||| || ||||| ||||||||| Sbjct 3261343 CTTCCAAAGTAATAGTTTTGCCGGTGAGTGTCTTCACGAAAATTTGCATA 3261294 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || || || | ||||| || | || ||||| || || |||||||| ||| | Sbjct 3259851 CCACCACGCAAGCGAAGGACTAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAC 3259792 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||| || | ||| ||||| || ||||||||||||| ||||| ||||| Sbjct 3259791 AAGGTACGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGAGGA 3259732 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || || ||||| |||||| ||| | | ||| | || || | ||||| || Sbjct 3259731 ATACCCTCCTTGTCCTGAATTTTGGCTTTAACGTTTTCAATTGTATCGGAAGGTTCAACC 3259672 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | || || || ||||||||||| ||||| ||||||||| Sbjct 3259671 TCCAGAGTAATTGTTTTACCCGTCAATGTTTTAACGAAGATTTGCATA 3259624 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || |||||||| || || |||| ||||| ||||| || ||||| |||||| | Sbjct 3261065 CCACCACGCAAACGCAATACCAAGTGAAGAGTAGACTCTTTCTGGATGTTATAATCGGAC 3261006 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| |||||| | || ||||| || ||||||||||||| ||||| || || Sbjct 3261005 AGGGTGCGACCGTCTTCCAACTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGA 3260946 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||| || || || || || | | || | || |||| ||| |||||| Sbjct 3260945 ATGCCTTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAGGGCTCTACT 3260886 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | || ||||| || | || || ||||| ||||||||| Sbjct 3260885 TCCAAGGTGATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCATA 3260838 >seq11 Length=2963766 Score = 140 bits (154), Expect = 3e-28 Identities = 931/1487 (63%), Gaps = 45/1487 (3%) Strand=Plus/Minus Query 150371 ACGGTAAATTGCTGCGAATTGGCCGCCGGAAGTGTGCGAAAATAGTACATGCCGGTTTTG 150430 || |||||||| | ||| || || || ||||| || || |||||||| |||||| Sbjct 1983214 ACAGTAAATTGTATAGCATTTGCGGCGGGTTTCGTGCGCAAGTAATACATGCCAGTTTTG 1983155 Query 150431 AGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATTTTAGGCAAAGTAGGGTTT-GC 150489 || || |||||||||||| | ||| | || | | ||| | || ||| |||| || Sbjct 1983154 AGACCTGCCTTCCAACCGTAAAAGTGTATAGAAGTAAGTTT-GCCATAGTTTGGTTCAGC 1983096 Query 150490 CATGTACACGTTGAACGATTGACTTTGATCGATAAATGCTCCCCTGTCTGCTGCCATTTC 150549 || || | ||||||||| |||||||||||||| || || || | ||||| ||||||| Sbjct 1983095 CACGTGTATGTTGAACGACTGACTTTGATCGATGAAAGCGCCACGATCTGCAGCCATTT- 1983037 Query 150550 AATCATATATTTTCCATTGTTCTCCCAAATTTCCCAGATTGTCATGTACAGCTTTTTTAG 150609 | || | || ||| | |||| ||||| | || |||| | | || Sbjct 1983036 --TGATTGAGGTT------TTCACAGAAATCTCCCAAACAGTTTTGTATAAATCGCGTAT 1982985 Query 150610 ATTGTCGGGAATTTTGGCGATAGAAGCTATCGATCCTCTGTTTGCCATGATTGTTTTTCG 150669 || | || || | || |||||| || | | | || || | ||| Sbjct 1982984 ATGCTGTGGTATGGATTCAATGTTTTGTATCGAGCCGCGACTAGTTATAATATTATTTTT 1982925 Query 150670 CATACTATTTGTATAGAGATTTAATTTGATTAGATCATCGACCAAGTAGCGGTTGACAAC 150729 |||| || | | | || | ||||||| | ||||| | || ||||| Sbjct 1982924 CATATCATCATCCCACAAACCCAACTCAGTTAGATCGCGTAACAAGTGATGATTTACAAC 1982865 Query 150730 TTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATT---ACTGTGAAACGGTTCAAA 150786 ||||||||| ||||| | ||||| | | | | ||| | ||| | |||||||| Sbjct 1982864 TTGAAATTCACCCGAAAGCACACGGCGTGTATAGATATTGGAAGTGT---ATGGTTCAAA 1982808 Query 150787 TGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAGCAA 150846 |||||| |||||| | |||||||| || | || || |||||| ||| | ||||| Sbjct 1982807 TGACTCATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAAGCAGCAA 1982748 Query 150847 TGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTCCCATAACGA 150906 || ||||| | || | || | || || ||||| | | ||| | ||| | Sbjct 1982747 AGAGTTACGAACGCCATGTTGCTTAATTTTCTCCTTCAATTCGGTCCAATTCCAAAGATC 1982688 Query 150907 AGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTGCTACCGGC 150966 | | ||| | ||| ||||| || || || | || || | || | ||| | Sbjct 1982687 ACTTGGTGTCTTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGGTGAACCTAC 1982628 Query 150967 AAACGTGCTATAAGGCTCACTAACAGATGCCAGTTCGTAACTGGCCTCGAGCGCAGCATG 151026 | | || ||||| || || | |||| |||||| || |||||| ||| Sbjct 1982627 ATATGTTTCATAAGTGCCATATTTTTCGGCTAATTCGCAACTGGATTCCAGCGCACCATA 1982568 Query 151027 ATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCACGTACGGTAT 151086 || | |||||| ||||||| ||| || | | || |||| || |||| || Sbjct 1982567 GTAAATAGTTTCGAATATTTGTTGATTTAAGCGGAATGCTTCATCACTTTCGTATGGATA 1982508 Query 151087 GCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGATGGGACGATGGCG 151146 |||| | || || || ||||| |||||||| | ||| || |||||||||||||| | Sbjct 1982507 ACGCATTAAAATTAAAGCGTCGGCAAAACCTTGTACGCCAATACCGATGGGACGATGTCT 1982448 Query 151147 CATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCAA 151206 | ||| ||||| ||||| || || || ||| || || ||||||||||| Sbjct 1982447 GAAATTCGATTTCTTTGCCTCCGGTATTGGATAATGATTAATGTCTATGATTTTATTCAA 1982388 Query 151207 ACTA---TTCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAG---TATC 151260 | || | || | ||||| | || | | | ||| ||| | | | || Sbjct 1982387 ATTACGTGTAACGGTCTTGGTGACCTCTTTG---AGGCGCTTAAAGTCATACGTTTTCTC 1982331 Query 151261 ATTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGG 151320 ||| | | | || | || ||||| |||| ||||| || || || ||||| Sbjct 1982330 GGGTGTGACAAACATGTTCAATGCGATCGAAGCTAAGTTACACACAGCTACCTCATCGGG 1982271 Query 151321 CGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACT 151380 || |||||| || ||||| | ||| ||||| || || || || || ||| Sbjct 1982270 TGCCGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTG 1982211 Query 151381 TTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGC 151440 ||||| || || || || ||||| || || |||||||||||||||||||| || || | Sbjct 1982210 CTGATTACTCTTTCGATTACAAGCATCTTTATATAACATGTACGGTGTGCCAGTCTCTAC 1982151 Query 151441 TTGAATTTCTATAATGTTTCGCATTAATGTAACCGCGGGCATTTGCTCGCGAA-----AC 151495 ||| ||| |||||| | | || | || | || ||| | | | || Sbjct 1982150 TTGCGATTCAATAATG--GCAAACCAAAG--ACTTTGTGCTTTTACCTTCTTATTAGCAC 1982095 Query 151496 TGGCCTTTATCCTCATAATGTTTGTACCAGTATTCAAAGTCATCACCATACGTATCGTTG 151555 | |||| | ||||| | ||| | | |||||| || ||||| || || | Sbjct 1982094 -GTCCTTCCTGTTCATATTTCAGATACAATTTTTCAAACTCCTCACCCCACACTTCATGT 1982036 Query 151556 AGCTTAGGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTC 151615 | |||||| | || || ||||||| ||||| | || |||| || ||| || Sbjct 1982035 AAACCAGGACATTTGTGTGGGCACATTAGCGACCAGTCTTCATTGGCTTCGACACGTCTC 1981976 Query 151616 ATAAATATATCCGGAACCCATAATGCGTTCATCAAATCAC--GCGCTTTGGTG-TCTTCG 151672 ||||||| ||| || | ||| | |||| | |||||| | |||| |||| ||||| Sbjct 1981975 ATAAATAGATCAGGTATCCACAGAGCGTAGAACAAATCTCTGGCGC---GGTGCTCTTCT 1981919 Query 151673 CTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACG 151732 | || ||||| || | |||| || | || || |||||| ||||| | | Sbjct 1981918 TTACCGGTGTTTTTCTTCAAATCCAAAAATTCGAATATATCAGCATGCCATGGTTCCAGG 1981859 Query 151733 TACACTGCTTGGGCGCCTTTTCGCTT---GCCACCTTGATCCACGTGACGCACCATATTA 151789 || | || ||||||| || || ||||||||||||||| | ||| | | |||| Sbjct 1981858 TAGATGGCAAAGGCGCCTGGCCGTTTACCGCCACCTTGATCCACATAACGTGCTACATTA 1981799 Query 151790 TTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCGGTGCCGTTCGT 151836 || || |||||||||||||| | || || | | |||||| || || Sbjct 1981798 TTGAACACTCGCAGCATTGGCACCAAACCATTCGAGGTGCCATTTGT 1981752 >seq138 Length=433312 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| |||| | ||| | |||||||| | ||||| ||||| || || || || || Sbjct 21756 GCCACCTCTAAGACGAAGGACTAAATGTAACGTAGACTCTTTCTGAATATTATAGTCAGC 21697 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || ||||| || || | ||||| || ||| | || ||||| || ||||| || || Sbjct 21696 CAATGTGCGACCATCCTCCAACTGTTTTCCGGCAAAAATTAGACGCTGTTGATCTGGCGG 21637 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| || || |||||| || | ||||| | || || | ||||| || Sbjct 21636 AATACCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGTTCAAC 21577 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 |||| ||| | |||||||| || | ||||||||||| |||||||| ||| Sbjct 21576 CTCAAGAGTGATGGTCTTGCCCGTAAGGGTTTTTACGAAAATTTGCATTGCT 21525 >seq75 Length=755269 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 54800 GCTTCAATGTTGCCCAAATCACCGACGTGTCTCACCGCAGCGTTGGGCGCACCATGATTG 54859 |||||||| |||||||||||||| | || | || || | ||||||||||| | Sbjct 515236 GCTTCAATATTGCCCAAATCACCCAAATGACGATTTTCATCGGTTGGCGCACCATGTTCC 515177 Query 54860 CTACCCGTCGGATTAAAATGTTCTCCGGCCGAAGTACAGCCGTTGCTGATGTCGCCAAAT 54919 | || | |||||||||||| ||| || || || |||||||| || | || |||||| Sbjct 515176 TTGCCAGCAGGATTAAAATGTGGTCCAGCTGAGGTGCAGCCGTTAGTGTTATCACCAAAT 515117 Query 54920 TCGTGTACGTGAAAACCGTGCAGTCCTTT 54948 || ||||| || || || || || || || Sbjct 515116 TCATGTACATGGAAGCCATGAAGACCCTT 515088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488322946053600