Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29]
36,198 sequences; 471,780,370 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq4 123 2e-23
seq138 107 2e-18
>seq4
Length=3596895
Score = 123 bits (136), Expect = 2e-23
Identities = 156/209 (75%), Gaps = 4/209 (2%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
||||||| ||||| || ||||| ||||| |||||| || ||| | | | ||||| |
Sbjct 3259602 AAATGTAAAGTGGATTCCTTCTGAATATTATAATCGGACAGTGTGCGTCCA-TCCTCCAA 3259544
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||| ||||| ||| |||| | || || || || || ||||| |||||||| || |||
Sbjct 3259543 CTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCT-TGAA 3259485
Query 133574 CTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
||| |||| || | ||||| || |||| ||||| || || | |||| |||||| |
Sbjct 3259484 TTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTC 3259425
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATG 133661
| |||| |||||| |||||||||||||||
Sbjct 3259424 CCGTCAAAGTTTTGACGAAAATCTGCATG 3259396
Score = 107 bits (118), Expect = 2e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||||||||| || || |||||| || ||| ||| ||| || | |||||| ||
Sbjct 3261035 GTAGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGACC-GTCTTCCAACTGCTTACC 3260977
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || || || || || || || || ||||||||||| || |||||| |||
Sbjct 3260976 GGCGAAGATCAGACGTTGTTGATCTGGTGGAATGCCTTCCTTATCTTGGATCTTAGCCTT 3260917
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | ||||| || || | |||||| || || | ||||| ||||||||| || || ||
Sbjct 3260916 AACGTTCTCAATGGTATCTGAGGGCTCTACTTCCAAGGTGATGGTTTTGCCAGTGAGGGT 3260857
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| || |||||
Sbjct 3260856 CTTCACGAAGATTTGCAT 3260839
Score = 96.9 bits (106), Expect = 3e-15
Identities = 147/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
||||| | || || || |||||||||||||| ||| || || | | | ||||||||
Sbjct 3261500 AAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTTCGTCCA-TCCTCGAG 3261442
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||||| || ||| | || || || || || || || || ||||| ||||| || ||
Sbjct 3261441 TTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGAATGCCCTCCTTATCTTGAAT 3261382
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| ||| | | ||||| ||||| | ||||| || || | || | ||||||||
Sbjct 3261381 CTTAGCCTTTACATTCTCAATTGTGTCCGATGGCTCAACTTCCAAAGTAATAGTTTTGCC 3261322
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660
||| || || || |||||||| |||||
Sbjct 3261321 GGTGAGTGTCTTCACGAAAATTTGCAT 3261295
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| ||||||||||| || || |||||| || ||| ||| || | ||| |||||
Sbjct 3260277 GTAGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGTCCGTCTTCCAACTGTTTGCCG 3260218
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| | || | || || || || || || || || ||||| || |||||| |||
Sbjct 3260217 GCGAAGATCAAACGTTGTTGATCTGGTGGAATTCCCTCCTTATCTTGGATCTTAGCCTTA 3260158
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | ||||| || || | |||||| || || | ||||| ||||||||| || || ||
Sbjct 3260157 ACGTTCTCAATGGTATCTGAGGGCTCTACTTCCAAGGTGATGGTTTTGCCAGTGAGGGTC 3260098
Query 133644 TTTACGAAAATCTGCAT 133660
|| ||||| || |||||
Sbjct 3260097 TTCACGAAGATTTGCAT 3260081
Score = 84.2 bits (92), Expect = 2e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
|||||| | ||||| || ||| | || | || || || || || || |||||||||||
Sbjct 3261222 GTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGAATGCCTTCCTT 3261163
Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
|| |||||| |||| | || | ||||||| || || || || | |||||
Sbjct 3261162 ATCCTGGATCTTGGCTTTGACATTTTCTATGGTGTCGGATGGTTCAACTTCCAAGGTGAT 3261103
Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|||||||||||| || || || |||||||| |||||
Sbjct 3261102 GGTTTTGCCGGTGAGGGTCTTCACGAAAATTTGCAT 3261067
>seq138
Length=433312
Score = 107 bits (118), Expect = 2e-18
Identities = 154/212 (73%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
||||||| || ||||||||||| ||||| || || ||| ||| ||| | ||||| |
Sbjct 21734 AAATGTAACGTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCA-TCCTCCAA 21676
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||| || || || |||| || ||||| || || || || || |||||||| || |||
Sbjct 21675 CTGTTTTCCGGCAAAAATTAGACGCTGTTGATCTGGCGGAATACCTTCCTTATCT-TGAA 21617
Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
||| || | | | || |||| || || | || || || || | |||| ||| ||||
Sbjct 21616 TTTTGGCCTTAACATGTTCAATAGTATCCGAAGGTTCAACCTCAAGAGTGATGGTCTTGC 21557
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664
| || || |||||||||||||| ||||| |||
Sbjct 21556 CCGTAAGGGTTTTTACGAAAATTTGCATTGCT 21525
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483202064173520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |