Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29] 36,198 sequences; 471,780,370 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4 123 2e-23 seq138 107 2e-18 >seq4 Length=3596895 Score = 123 bits (136), Expect = 2e-23 Identities = 156/209 (75%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||||| ||||| || ||||| ||||| |||||| || ||| | | | ||||| | Sbjct 3259602 AAATGTAAAGTGGATTCCTTCTGAATATTATAATCGGACAGTGTGCGTCCA-TCCTCCAA 3259544 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| ||||| ||| |||| | || || || || || ||||| |||||||| || ||| Sbjct 3259543 CTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCT-TGAA 3259485 Query 133574 CTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| || | ||||| || |||| ||||| || || | |||| |||||| | Sbjct 3259484 TTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTC 3259425 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATG 133661 | |||| |||||| ||||||||||||||| Sbjct 3259424 CCGTCAAAGTTTTGACGAAAATCTGCATG 3259396 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || || |||||| || ||| ||| ||| || | |||||| || Sbjct 3261035 GTAGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGACC-GTCTTCCAACTGCTTACC 3260977 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || || || || || || || ||||||||||| || |||||| ||| Sbjct 3260976 GGCGAAGATCAGACGTTGTTGATCTGGTGGAATGCCTTCCTTATCTTGGATCTTAGCCTT 3260917 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || || | |||||| || || | ||||| ||||||||| || || || Sbjct 3260916 AACGTTCTCAATGGTATCTGAGGGCTCTACTTCCAAGGTGATGGTTTTGCCAGTGAGGGT 3260857 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 3260856 CTTCACGAAGATTTGCAT 3260839 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || || |||||||||||||| ||| || || | | | |||||||| Sbjct 3261500 AAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGACAAAGTTCGTCCA-TCCTCGAG 3261442 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| | || || || || || || || || ||||| ||||| || || Sbjct 3261441 TTGCTTACCGGCGAAGATCAGACGTTGTTGATCTGGTGGAATGCCCTCCTTATCTTGAAT 3261382 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| ||||| | ||||| || || | || | |||||||| Sbjct 3261381 CTTAGCCTTTACATTCTCAATTGTGTCCGATGGCTCAACTTCCAAAGTAATAGTTTTGCC 3261322 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || |||||||| ||||| Sbjct 3261321 GGTGAGTGTCTTCACGAAAATTTGCAT 3261295 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||||||||| || || |||||| || ||| ||| || | ||| ||||| Sbjct 3260277 GTAGACTCTTTCTGGATGTTATAATCGGACAGGGTGCGTCCGTCTTCCAACTGTTTGCCG 3260218 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | || || || || || || || || ||||| || |||||| ||| Sbjct 3260217 GCGAAGATCAAACGTTGTTGATCTGGTGGAATTCCCTCCTTATCTTGGATCTTAGCCTTA 3260158 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| || || | |||||| || || | ||||| ||||||||| || || || Sbjct 3260157 ACGTTCTCAATGGTATCTGAGGGCTCTACTTCCAAGGTGATGGTTTTGCCAGTGAGGGTC 3260098 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 3260097 TTCACGAAGATTTGCAT 3260081 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||| | ||||| || ||| | || | || || || || || || ||||||||||| Sbjct 3261222 GTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGAATGCCTTCCTT 3261163 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || |||||| |||| | || | ||||||| || || || || | ||||| Sbjct 3261162 ATCCTGGATCTTGGCTTTGACATTTTCTATGGTGTCGGATGGTTCAACTTCCAAGGTGAT 3261103 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||||||||| || || || |||||||| ||||| Sbjct 3261102 GGTTTTGCCGGTGAGGGTCTTCACGAAAATTTGCAT 3261067 >seq138 Length=433312 Score = 107 bits (118), Expect = 2e-18 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||||| || ||||||||||| ||||| || || ||| ||| ||| | ||||| | Sbjct 21734 AAATGTAACGTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCA-TCCTCCAA 21676 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || || |||| || ||||| || || || || || |||||||| || ||| Sbjct 21675 CTGTTTTCCGGCAAAAATTAGACGCTGTTGATCTGGCGGAATACCTTCCTTATCT-TGAA 21617 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || | | | || |||| || || | || || || || | |||| ||| |||| Sbjct 21616 TTTTGGCCTTAACATGTTCAATAGTATCCGAAGGTTCAACCTCAAGAGTGATGGTCTTGC 21557 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 | || || |||||||||||||| ||||| ||| Sbjct 21556 CCGTAAGGGTTTTTACGAAAATTTGCATTGCT 21525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483202064173520