Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20oleae_20[refseq_20GCF_5F001188975.1_202015-07-29]
36,198 sequences; 471,780,370 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq15 122 6e-23
seq4 118 7e-22
seq138 107 1e-18
>seq15
Length=2140121
Score = 122 bits (134), Expect = 6e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||| | ||| | ||||| || || || ||| ||||| |||||||| |||||
Sbjct 600217 ACCACCTCGAAGACGCAGAACCAAGTGGAGTGTTGACTCCTTTTGAATGTTGTAGTCGGA 600276
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| ||||| | || || |||||||||||||| || ||||||||||| || ||| | ||
Sbjct 600277 CAAGGTGCGACCATCTTCTAATTGTTTTCCGGCGAAGATCAAACGCTGTTGGTCTGGGGG 600336
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||| |||||||| ||||| | || |||| || | |||||| | || |
Sbjct 600337 GATACCCTCTTTGTCTTGGATTTT-AGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGA 600395
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | ||||| || ||||| ||||| ||||| || || ||||||||
Sbjct 600396 CCTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 600444
>seq4
Length=3596895
Score = 118 bits (130), Expect = 7e-22
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | ||| |||| || ||||||| |||| || || || || || ||||||||
Sbjct 3259624 ACCACCACGCAAGCGTAGAACTAAATGTAAAGTGGATTCCTTCTGAATATTATAATCGGA 3259565
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||||||||| | || ||||| ||||| || || ||||||||||| || |||||| | ||
Sbjct 3259564 CAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGG 3259505
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||||| || || |||||| | || |||| || | || ||| | || |
Sbjct 3259504 GATTCCTTCCTTATCTTGAATTTT-AGCTTTGACATTCTCAATAGTATCGGAAGGCTCAA 3259446
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | ||||| ||||| || || || ||||| || || ||||||||
Sbjct 3259445 CCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 3259397
Score = 116 bits (128), Expect = 2e-21
Identities = 172/240 (72%), Gaps = 4/240 (2%)
Strand=Plus/Minus
Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570
|||||| || ||||| | | ||| | |||||||| || || ||| || || |||
Sbjct 3259407 AAAATCTGCATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATG 3259348
Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630
||||||||||| | |||||| |||| |||| ||| || |||||||| || ||||| ||
Sbjct 3259347 TTGTAATCGGACAAGGTGCGTCCGTCTTCCAGTTGCTTACCGGCAAAGATTAAACGTTGT 3259288
Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689
|||||| | || | ||||||||||| ||| || | || ||||| || | || ||
Sbjct 3259287 TGATCTGGGGGGATTCCTTCTTTGTCTTGAATCTT-AGCTTTAACATTTTCAATAGTATC 3259229
Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || ||| || || | ||||| || || || || || || || || ||||| |||||
Sbjct 3259228 GGATGGTTCAACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 3259169
>seq138
Length=433312
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||| | ||| | || ||||||| || |||||| || || || || || |
Sbjct 21755 CCACCTCTAAGACGAAGGACTAAATGTAACGTAGACTCTTTCTGAATATTATAGTCAGCC 21696
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| |||||| | || ||||| ||||||||||||||||| | |||||| |||||| ||||
Sbjct 21695 AATGTGCGACCATCCTCCAACTGTTTTCCGGCAAAAATTAGACGCTGTTGATCTGGCGGA 21636
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| |||||| || || |||||| | | ||||| || | || || | ||| ||
Sbjct 21635 ATACCTTCCTTATCTTGAATTTT-GGCCTTAACATGTTCAATAGTATCCGAAGGTTCAAC 21577
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| ||||| || || || || | |||||||| || || |||||
Sbjct 21576 CTCAAGAGTGATGGTCTTGCCCGTAAGGGTTTTTACGAAAATTTGCAT 21529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328558987916160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |